Commits · 998de3003542df14fef134a21e4447130d3a45d0 · Riccardo Vicedomini / metaclade2 · GitLab

08 Nov, 2020 1 commit
- minor update in output and cfg files · 998de300
  Riccardo Vicedomini authored Nov 08, 2020
  
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09 May, 2020 10 commits
- job set to 1 for local run, -j will be used only for --sge · 17895f2f
  Riccardo Vicedomini authored May 09, 2020
  
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- updated readme · e90ce415
  Riccardo Vicedomini authored May 09, 2020
  
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- updated readme · f5477775
  Riccardo Vicedomini authored May 09, 2020
  
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- given the possibility to remove temporary files and specify output file · cf450ee5
  Riccardo Vicedomini authored May 09, 2020
  
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- changed some eprint with print · d3d1fb93
  Riccardo Vicedomini authored May 09, 2020
  
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- domain annotation is now sorted by sequence-id and sequence-start for simple architecture output · b789b9ea
  Riccardo Vicedomini authored May 09, 2020
  
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- updated version · 32ef540c
  Riccardo Vicedomini authored May 09, 2020
  
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- updated readme · 2912e611
  Riccardo Vicedomini authored May 09, 2020
  
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- set threads to 1 for hmmsearch, removed old commented code · 12b34f10
  Riccardo Vicedomini authored May 09, 2020
  
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- fixed a bug with DAMA, domain hits needed to be sorted by sequence-id · 17622dc1
  Riccardo Vicedomini authored May 09, 2020
  
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08 May, 2020 4 commits
- using default --cpu value for hmmsearch · a1263033
  Riccardo Vicedomini authored May 08, 2020
  
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- use of --line-buffer for parallel should speed up parallel processes · d43e3691
  Riccardo Vicedomini authored May 08, 2020
  
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- README updated · df097cce
  Riccardo Vicedomini authored May 08, 2020
  
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- added possibility to set DAMA's overlapping thresholds · ba540c6f
  Riccardo Vicedomini authored May 08, 2020
  
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25 Apr, 2020 7 commits
- updated version · 9b8c05d5
  Riccardo Vicedomini authored Apr 25, 2020
  
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- Merge branch 'master' of http://gitlab.lcqb.upmc.fr/vicedomini/metaclade2 · 09ce7ba4
  Riccardo Vicedomini authored Apr 25, 2020
  
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- fixed problem with trap · 8da900e4
  Riccardo Vicedomini authored Apr 25, 2020
  
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- small update · b2a5d472
  Riccardo Vicedomini authored Apr 25, 2020
  
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- scripts are automatically run locally if --sge option is not used · c5fd75e9
  Riccardo Vicedomini authored Apr 25, 2020
  
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- fixed error with existing directory · 53c6ca05
  Riccardo Vicedomini authored Apr 25, 2020
  
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- added .gitignore file · f38df41d
  Riccardo Vicedomini authored Apr 25, 2020
  
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18 Mar, 2020 2 commits
- update version date · b6eb4dba
  Riccardo Vicedomini authored Mar 18, 2020
  
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- filter_hits now works even if input files do not exist · 4cdba9e5
  Riccardo Vicedomini authored Mar 18, 2020
  
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10 Mar, 2020 3 commits
- corrected the example in readme · 8f9ed6a3
  Riccardo Vicedomini authored Mar 10, 2020
  
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- put correct model path for lcqb cluster in the config file · 8a24a867
  Riccardo Vicedomini authored Mar 10, 2020
  
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- Species name of the model used is now reported in output · c0208e54
  Riccardo Vicedomini authored Mar 10, 2020
  
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27 Feb, 2020 1 commit
- defaults for the e-value thresholds are now printed in the usage/help · cd0fa0a8
  Riccardo Vicedomini authored Feb 27, 2020
  
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16 Feb, 2020 6 commits
- Update README.md · f82db512
  Riccardo Vicedomini authored Feb 16, 2020
  
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- Update README.md · e334788e
  Riccardo Vicedomini authored Feb 16, 2020
  
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- Update README.md · b6268f87
  Riccardo Vicedomini authored Feb 16, 2020
  
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- Update README.md · 1b6d600b
  Riccardo Vicedomini authored Feb 16, 2020
  
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- Update README.md · 41b9da71
  Riccardo Vicedomini authored Feb 16, 2020
  
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- Update README.md · 0d2fcdea
  Riccardo Vicedomini authored Feb 16, 2020
  
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15 Feb, 2020 6 commits
- updated version date · eefdbe79
  Riccardo Vicedomini authored Feb 15, 2020
  
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- first working implementation of MetaCLADE with SGE support · b46f6d15
  Riccardo Vicedomini authored Feb 15, 2020
  
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- edited the main configuration file with the link of the library and DAMA path on the LCQB cluster · f1060fcf
  Riccardo Vicedomini authored Feb 15, 2020
  
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- added just an example command in the readme · a7c2e101
  Riccardo Vicedomini authored Feb 15, 2020
  
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- first fully operational version to test on SGE · c8465df8
  Riccardo Vicedomini authored Feb 15, 2020
  
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- removed wrong test files · 67af8343
  Riccardo Vicedomini authored Feb 15, 2020
  
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