removed wrong test files

67af8343 · Riccardo Vicedomini · 3ae3b87d · 3ae3b87d · 3ae3b87d · 3ae3b87d
Commit 67af8343 authored Feb 15, 2020 by Riccardo Vicedomini
35 changed files
--- a/test/pippo/jobs/1_search/pippo_1.sh
+++ b/test/pippo/jobs/1_search/pippo_1.sh
-python3 /home/vicedomini/projects/metaclade2/scripts/search_hmm.py PF03441 hmmsearch /home/vicedomini/projects/metaclade2/data/models/HMMs/PF03441.hmm.gz /home/vicedomini/projects/metaclade2/test/test.fa /home/vicedomini/projects/metaclade2/test/pippo/temp /home/vicedomini/projects/metaclade2/test/pippo/results/1_search pippo 
-python3 /home/vicedomini/projects/metaclade2/scripts/search_ccms_all.py PF03441 hmmsearch /home/vicedomini/projects/metaclade2/data/models/CCMs/PF03441.hmm.gz /home/vicedomini/projects/metaclade2/test/test.fa /home/vicedomini/projects/metaclade2/test/pippo/temp /home/vicedomini/projects/metaclade2/test/pippo/results/1_search pippo 
--- a/test/pippo/jobs/1_search/pippo_10.sh
+++ b/test/pippo/jobs/1_search/pippo_10.sh
--- a/test/pippo/jobs/1_search/pippo_11.sh
+++ b/test/pippo/jobs/1_search/pippo_11.sh
--- a/test/pippo/jobs/1_search/pippo_12.sh
+++ b/test/pippo/jobs/1_search/pippo_12.sh
--- a/test/pippo/jobs/1_search/pippo_13.sh
+++ b/test/pippo/jobs/1_search/pippo_13.sh
--- a/test/pippo/jobs/1_search/pippo_14.sh
+++ b/test/pippo/jobs/1_search/pippo_14.sh
--- a/test/pippo/jobs/1_search/pippo_15.sh
+++ b/test/pippo/jobs/1_search/pippo_15.sh
--- a/test/pippo/jobs/1_search/pippo_16.sh
+++ b/test/pippo/jobs/1_search/pippo_16.sh
--- a/test/pippo/jobs/1_search/pippo_2.sh
+++ b/test/pippo/jobs/1_search/pippo_2.sh
-python3 /home/vicedomini/projects/metaclade2/scripts/search_hmm.py PF00875 hmmsearch /home/vicedomini/projects/metaclade2/data/models/HMMs/PF00875.hmm.gz /home/vicedomini/projects/metaclade2/test/test.fa /home/vicedomini/projects/metaclade2/test/pippo/temp /home/vicedomini/projects/metaclade2/test/pippo/results/1_search pippo 
-python3 /home/vicedomini/projects/metaclade2/scripts/search_ccms_all.py PF00875 hmmsearch /home/vicedomini/projects/metaclade2/data/models/CCMs/PF00875.hmm.gz /home/vicedomini/projects/metaclade2/test/test.fa /home/vicedomini/projects/metaclade2/test/pippo/temp /home/vicedomini/projects/metaclade2/test/pippo/results/1_search pippo 
--- a/test/pippo/jobs/1_search/pippo_3.sh
+++ b/test/pippo/jobs/1_search/pippo_3.sh
-python3 /home/vicedomini/projects/metaclade2/scripts/search_hmm.py PF03167 hmmsearch /home/vicedomini/projects/metaclade2/data/models/HMMs/PF03167.hmm.gz /home/vicedomini/projects/metaclade2/test/test.fa /home/vicedomini/projects/metaclade2/test/pippo/temp /home/vicedomini/projects/metaclade2/test/pippo/results/1_search pippo 
-python3 /home/vicedomini/projects/metaclade2/scripts/search_ccms_all.py PF03167 hmmsearch /home/vicedomini/projects/metaclade2/data/models/CCMs/PF03167.hmm.gz /home/vicedomini/projects/metaclade2/test/test.fa /home/vicedomini/projects/metaclade2/test/pippo/temp /home/vicedomini/projects/metaclade2/test/pippo/results/1_search pippo 
--- a/test/pippo/jobs/1_search/pippo_4.sh
+++ b/test/pippo/jobs/1_search/pippo_4.sh
-python3 /home/vicedomini/projects/metaclade2/scripts/search_hmm.py PF12546 hmmsearch /home/vicedomini/projects/metaclade2/data/models/HMMs/PF12546.hmm.gz /home/vicedomini/projects/metaclade2/test/test.fa /home/vicedomini/projects/metaclade2/test/pippo/temp /home/vicedomini/projects/metaclade2/test/pippo/results/1_search pippo 
-python3 /home/vicedomini/projects/metaclade2/scripts/search_ccms_all.py PF12546 hmmsearch /home/vicedomini/projects/metaclade2/data/models/CCMs/PF12546.hmm.gz /home/vicedomini/projects/metaclade2/test/test.fa /home/vicedomini/projects/metaclade2/test/pippo/temp /home/vicedomini/projects/metaclade2/test/pippo/results/1_search pippo 
--- a/test/pippo/jobs/1_search/pippo_5.sh
+++ b/test/pippo/jobs/1_search/pippo_5.sh
--- a/test/pippo/jobs/1_search/pippo_6.sh
+++ b/test/pippo/jobs/1_search/pippo_6.sh
--- a/test/pippo/jobs/1_search/pippo_7.sh
+++ b/test/pippo/jobs/1_search/pippo_7.sh
--- a/test/pippo/jobs/1_search/pippo_8.sh
+++ b/test/pippo/jobs/1_search/pippo_8.sh
--- a/test/pippo/jobs/1_search/pippo_9.sh
+++ b/test/pippo/jobs/1_search/pippo_9.sh
--- a/test/pippo/jobs/2_filter/pippo_1.sh
+++ b/test/pippo/jobs/2_filter/pippo_1.sh
-python3 /home/vicedomini/projects/metaclade2/scripts/filter_hits.py /home/vicedomini/projects/metaclade2/test/pippo/results/1_search/PF03441/PF03441.hmm.res /home/vicedomini/projects/metaclade2/test/pippo/results/1_search/PF03441/PF03441.ccms.res /home/vicedomini/projects/metaclade2/test/pippo/results/2_filter/PF03441.best.res
--- a/test/pippo/jobs/2_filter/pippo_10.sh
+++ b/test/pippo/jobs/2_filter/pippo_10.sh
--- a/test/pippo/jobs/2_filter/pippo_11.sh
+++ b/test/pippo/jobs/2_filter/pippo_11.sh
--- a/test/pippo/jobs/2_filter/pippo_12.sh
+++ b/test/pippo/jobs/2_filter/pippo_12.sh
--- a/test/pippo/jobs/2_filter/pippo_13.sh
+++ b/test/pippo/jobs/2_filter/pippo_13.sh
--- a/test/pippo/jobs/2_filter/pippo_14.sh
+++ b/test/pippo/jobs/2_filter/pippo_14.sh
--- a/test/pippo/jobs/2_filter/pippo_15.sh
+++ b/test/pippo/jobs/2_filter/pippo_15.sh
--- a/test/pippo/jobs/2_filter/pippo_16.sh
+++ b/test/pippo/jobs/2_filter/pippo_16.sh
--- a/test/pippo/jobs/2_filter/pippo_2.sh
+++ b/test/pippo/jobs/2_filter/pippo_2.sh
-python3 /home/vicedomini/projects/metaclade2/scripts/filter_hits.py /home/vicedomini/projects/metaclade2/test/pippo/results/1_search/PF12546/PF12546.hmm.res /home/vicedomini/projects/metaclade2/test/pippo/results/1_search/PF12546/PF12546.ccms.res /home/vicedomini/projects/metaclade2/test/pippo/results/2_filter/PF12546.best.res
--- a/test/pippo/jobs/2_filter/pippo_3.sh
+++ b/test/pippo/jobs/2_filter/pippo_3.sh
-python3 /home/vicedomini/projects/metaclade2/scripts/filter_hits.py /home/vicedomini/projects/metaclade2/test/pippo/results/1_search/PF00875/PF00875.hmm.res /home/vicedomini/projects/metaclade2/test/pippo/results/1_search/PF00875/PF00875.ccms.res /home/vicedomini/projects/metaclade2/test/pippo/results/2_filter/PF00875.best.res
--- a/test/pippo/jobs/2_filter/pippo_4.sh
+++ b/test/pippo/jobs/2_filter/pippo_4.sh
-python3 /home/vicedomini/projects/metaclade2/scripts/filter_hits.py /home/vicedomini/projects/metaclade2/test/pippo/results/1_search/PF03167/PF03167.hmm.res /home/vicedomini/projects/metaclade2/test/pippo/results/1_search/PF03167/PF03167.ccms.res /home/vicedomini/projects/metaclade2/test/pippo/results/2_filter/PF03167.best.res
--- a/test/pippo/jobs/2_filter/pippo_5.sh
+++ b/test/pippo/jobs/2_filter/pippo_5.sh
--- a/test/pippo/jobs/2_filter/pippo_6.sh
+++ b/test/pippo/jobs/2_filter/pippo_6.sh
--- a/test/pippo/jobs/2_filter/pippo_7.sh
+++ b/test/pippo/jobs/2_filter/pippo_7.sh
--- a/test/pippo/jobs/2_filter/pippo_8.sh
+++ b/test/pippo/jobs/2_filter/pippo_8.sh
--- a/test/pippo/jobs/2_filter/pippo_9.sh
+++ b/test/pippo/jobs/2_filter/pippo_9.sh
--- a/test/pippo/jobs/3_arch/pippo.sh
+++ b/test/pippo/jobs/3_arch/pippo.sh
-python3 /home/vicedomini/projects/metaclade2/scripts/simple_arch.py -e 0.001 /home/vicedomini/projects/metaclade2/test/pippo/results/2_filter /home/vicedomini/projects/metaclade2/test/pippo/results/3_arch/pippo.arch.txt
--- a/test/pippo/results/1_search/PF03441/PF03441.ccms.res
+++ b/test/pippo/results/1_search/PF03441/PF03441.ccms.res
--- a/test/pippo/results/1_search/PF03441/PF03441.hmm.res
+++ b/test/pippo/results/1_search/PF03441/PF03441.hmm.res
-HMMer-3	1	199	202	tr|V7B5W0|V7B5W0_PHAVU	283	483	682	2.3e-65	207.5	0.96
-HMMer-3	1	200	202	tr|F0RPZ8|F0RPZ8_DEIPM	267	466	757	1.9e-62	198.0	0.95
-HMMer-3	1	199	202	tr|A0A072NB93|A0A072NB93_9DEIO	274	469	766	6.9e-56	176.6	0.91