Commit 8f9ed6a3 by Riccardo Vicedomini

corrected the example in readme

parent 8a24a867
......@@ -131,14 +131,14 @@ Each annotation has the following fields:
A test dataset is available in the `test` directory and can be run with the following command:
```
cd [METACLADE2_DIR]
metaclade2 -i ./test/test.fa -N testDataSet -d PF00875,PF03441,PF03167,PF12546 -W ./ -j 2
metaclade2 -i ./test/test.fa -N testDataSet -d PF00875,PF03441,PF03167,PF12546 -W ./test -j 2
```
This will create at most two scrips (jobs) in each directory of the pipeline.
Alternatively, if you are running MetaCLADE2 in a SGE cluster, the following script will run at most 2 jobs, each one using 2 CPUs, for each step of the pipeline:
```
cd [METACLADE2_DIR]
metaclade2 -i ./test/test.fa -N testDataSet -d PF00875,PF03441,PF03167,PF12546 -W ./ --sge --pe smp -j 2 -t 2
metaclade2 -i ./test/test.fa -N testDataSet -d PF00875,PF03441,PF03167,PF12546 -W ./test --sge --pe smp -j 2 -t 2
```
Results will be stored in the `[METACLADE2_DIR]/test/testDataSet/results` directory.
......
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