1. 31 Jul, 2023 2 commits
  2. 20 Jul, 2023 1 commit
  3. 07 Jul, 2023 1 commit
  4. 22 Jun, 2023 2 commits
  5. 21 Jun, 2023 1 commit
  6. 16 Jun, 2023 1 commit
    • Several small changes for improving installation. · 8d766d4d
      There is not any algorithmic changes in this version.
      However, I made the following changes to make Python
      and Docker installations better:
      1-I changed base ubuntu from 20.04 to 22.04.
      2-dssp 4.0 in Ubuntu 22.04 have a shitty requirement
       of CRYST record in the pdb file. Therefore, I manually
       installed dssp 3.
      3-I needed at least Python 3.9 for importlib.resources
        and I made the required changes both in setup.py and
        Dockerfile for that.
      Mustafa Tekpinar authored
  7. 13 Jun, 2023 1 commit
  8. 11 Jun, 2023 1 commit
  9. 08 Jun, 2023 1 commit
    • Removed ESGEMME_PATH dependecy for R files. · 0c7fe1f3
      Since esgemme calls two R scripts, namely
      pred.R and computePred.R, to do the calculations,
      I added them as package resource. They are copied
      to the folder where ESGEMME is initiated. I'm
      trying to remove this kind of path dependencies
      to make the program automatically installable and
      portable.
      Mustafa Tekpinar authored
  10. 07 Jun, 2023 1 commit
  11. 06 Jun, 2023 2 commits
  12. 04 Jun, 2023 1 commit
  13. 02 Jun, 2023 1 commit
    • Corrected a plotting bug for big proteins. · 4223d132
      When a protein is bigger than 3276 aa's,
      matplotlib can not plot it due to 2^16
      horizontal pixel size limit. I changed
      plotGEMMEmatrix function and the way I
      call it to solve this problem. Now, the
      program will divide big proteins into
      500 aa chuncks and plot it in that way.
      Mustafa Tekpinar authored
  14. 01 Jun, 2023 1 commit
  15. 30 May, 2023 1 commit
  16. 27 May, 2023 2 commits
  17. 26 May, 2023 1 commit
  18. 25 May, 2023 1 commit
  19. 24 May, 2023 1 commit
  20. 05 May, 2023 1 commit
  21. 15 Apr, 2023 1 commit
  22. 14 Apr, 2023 1 commit
  23. 06 Apr, 2023 1 commit
  24. 03 Apr, 2023 1 commit
  25. 31 Mar, 2023 1 commit
  26. 30 Mar, 2023 1 commit
  27. 29 Mar, 2023 1 commit
  28. 28 Mar, 2023 1 commit
  29. 20 Mar, 2023 1 commit
  30. 16 Mar, 2023 1 commit
  31. 15 Mar, 2023 6 commits