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PRESCOTT
Commit 7f40b9ac by Mustafa Tekpinar
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Commented the lines containing pssm output.

parent 8e2a131c
Showing with 3 additions and 3 deletions
computePred.R
......@@ -38,9 +38,9 @@ aliVeryCons = ali[pId>0.8,]
N = c(dim(ali)[[1]],dim(aliCons)[[1]],dim(aliVeryCons)[[1]])
#resAliCons = computePSSM(aliCons)
res = list(computePSSM(ali,N[1],npos),computePSSM(aliCons,N[2],npos),computePSSM(aliVeryCons,N[3],npos))
write.table(res[[1]][[3]],paste0(prot,"_pssm.txt"))
write.table(res[[2]][[3]],paste0(prot,"_pssm60.txt"))
write.table(res[[3]][[3]],paste0(prot,"_pssm80.txt"))
# write.table(res[[1]][[3]],paste0(prot,"_pssm.txt"))
# write.table(res[[2]][[3]],paste0(prot,"_pssm60.txt"))
# write.table(res[[3]][[3]],paste0(prot,"_pssm80.txt"))
# read evolutionary traces computed by JET
jet=read.table(paste(prot,"_jet.res",sep=""),head=TRUE)
......
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