Commits · 885b6e63f1048fb26ec3c8a2625bb49bb68eba26 · Mustafa Tekpinar / PRESCOTT · GitLab

07 Nov, 2023 2 commits
- Added to data folder an example gnomAD v4.0.0 csv file for MLH1. · 885b6e63
  Mustafa Tekpinar authored Nov 07, 2023
  
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- Changes in prescott.py for csv files of gnomAD v4.0.0. · 301e36d5
  Mustafa Tekpinar authored Nov 07, 2023
  
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06 Nov, 2023 1 commit
- Small changes mainly in prescott.py · 310fd718
  Mustafa Tekpinar authored Nov 06, 2023
  
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26 Oct, 2023 2 commits
- A minor correction in input usage. · 4efbe630
  Mustafa Tekpinar authored Oct 26, 2023
  
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- Removed some unneeded output files in prescott.py. · 6b1a9983
  Mustafa Tekpinar authored Oct 26, 2023
  
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25 Oct, 2023 2 commits
- Cleaned/clarified prescott script output. · 879fb656
  Mustafa Tekpinar authored Oct 25, 2023
  
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- Updated docs/input-preparation.rst. · 1329302c
  Mustafa Tekpinar authored Oct 25, 2023
  
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24 Oct, 2023 2 commits
- Updated README.md. · 037eb6d5
  Mustafa Tekpinar authored Oct 24, 2023
  
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- Documentation updates. · d72d07ea
  Mustafa Tekpinar authored Oct 24, 2023
  
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18 Oct, 2023 1 commit
- Added example aliMLH1.fasta and mlh1-af2.pdb files to the data directory. · 15106f2c
  Mustafa Tekpinar authored Oct 18, 2023
  
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11 Oct, 2023 1 commit
- Small changes in Dockerfile and Singularityfile.sh. · 837ed33e
  Mustafa Tekpinar authored Oct 11, 2023
  
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10 Oct, 2023 3 commits
- Simplified escott UI by removing args.fastaFile requirement. · 6dbd9c68
  Mustafa Tekpinar authored Oct 10, 2023
  
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- Removed unused coilbreakerlength argument. · e6123f25
  Mustafa Tekpinar authored Oct 10, 2023
  
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- Added introduction.rst and more documentation. · e86e4bf6
  Mustafa Tekpinar authored Oct 10, 2023
  
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06 Oct, 2023 1 commit
- Added escottfile and ranksorted args to prescott UI. · 42dbf51a
  Mustafa Tekpinar authored Oct 06, 2023
  
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04 Oct, 2023 3 commits
- Updated the Dockerfile for scikit-learn in prescott.py. · f98b9cb1
  Mustafa Tekpinar authored Oct 04, 2023
  
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- Little textual information changes. · 50abe3b4
  Mustafa Tekpinar authored Oct 04, 2023
  
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- Added Singularityfile.sh to the repository. · b537f05c
  Mustafa Tekpinar authored Oct 04, 2023
  
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03 Oct, 2023 1 commit
- Changes in prescott.py for proper AUC calculation over ClinVar labels. · f2e02c2f
  Mustafa Tekpinar authored Oct 03, 2023
  
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29 Sep, 2023 2 commits
- Updated README.md file for prescott module. · d68afcdb
  Mustafa Tekpinar authored Sep 29, 2023
  
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- Implemented ranksorting inside prescott.py. · 6f4cbe77
  Mustafa Tekpinar authored Sep 29, 2023
  
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27 Sep, 2023 4 commits
- Updated the documentation. · c87411cf
  Mustafa Tekpinar authored Sep 27, 2023
  
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- Description correction in prescott.py · 1b57c1f9
  Mustafa Tekpinar authored Sep 27, 2023
  
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- Changes to install prescott.py · dc17b3f5
  Mustafa Tekpinar authored Sep 27, 2023
  
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- Added the first version prescott.py and two data files for it. · de8d6564
  Mustafa Tekpinar authored Sep 27, 2023
  
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19 Sep, 2023 1 commit
- Renamed example bash script. · 8c6cd547
  Mustafa Tekpinar authored Sep 19, 2023
  
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14 Sep, 2023 2 commits
- A bit more changes for the logo. · 51b6b2b0
  Mustafa Tekpinar authored Sep 14, 2023
  
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- Updated PRESCOTT logo. · d746ca9b
  Mustafa Tekpinar authored Sep 14, 2023
  
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11 Aug, 2023 1 commit
- Updated documentation. · 1fd6d4c4
  Mustafa Tekpinar authored Aug 11, 2023
  
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09 Aug, 2023 4 commits
- Modified README. · 19352aaf
  Mustafa Tekpinar authored Aug 09, 2023
  
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- Several small changes related to the name change. · 9373675a
  Mustafa Tekpinar authored Aug 09, 2023
  
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- Old esgemme.py script became escott.py · f32168f1
  Mustafa Tekpinar authored Aug 09, 2023
  
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- Changed program name from ESGEMME to PRESCOTT. · 468bf9aa
  Mustafa Tekpinar authored Aug 09, 2023
  
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01 Aug, 2023 1 commit
- Changed default --retrievingMethod from local to input. · fdc001bc
  Mustafa Tekpinar authored Aug 01, 2023
  
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31 Jul, 2023 2 commits
- If a pdbfile is provided, normweightmode becomes sstjetormaxtwocomponent… · 21f4813c
```
If a pdbfile is provided, normweightmode becomes sstjetormaxtwocomponent automatically. Else, it is tjet.
```
  Mustafa Tekpinar authored Jul 31, 2023
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- Tested new argument (coilbreakerlength) but gave upon it eventually! · 8603802b
  Mustafa Tekpinar authored Jul 31, 2023
  
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20 Jul, 2023 1 commit
- Updated Dockerfile for v1.4.0 · e61bdc0c
  Mustafa Tekpinar authored Jul 20, 2023
  
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07 Jul, 2023 1 commit
- Added sstjetormaxtwocomponent as default normweightmode. · 9175fdba
  Mustafa Tekpinar authored Jul 07, 2023
  
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22 Jun, 2023 2 commits
- Update at the end of input-preparation.rst · 7447bfab
  Mustafa Tekpinar authored Jun 22, 2023
  
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- Added --maxcoillength argument. · 35c5654f
  Mustafa Tekpinar authored Jun 22, 2023
  
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