Initial commit

8b8e4e33 · Yasser Mohseni · 8b8e4e33 · 8b8e4e33 · 8b8e4e33 · 8b8e4e33
Commit 8b8e4e33 authored Feb 10, 2021 by Yasser Mohseni
136 changed files
--- a/.ipynb_checkpoints/Warsaw_PM_PPI-checkpoint.ipynb
+++ b/.ipynb_checkpoints/Warsaw_PM_PPI-checkpoint.ipynb
--- a/1BRS/EA71Y/mut_01_10000.pdb
+++ b/1BRS/EA71Y/mut_01_10000.pdb
--- a/1BRS/EA71Y/mut_02_10000.pdb
+++ b/1BRS/EA71Y/mut_02_10000.pdb
--- a/1BRS/EA71Y/mut_03_10000.pdb
+++ b/1BRS/EA71Y/mut_03_10000.pdb
--- a/1BRS/EA71Y/mut_04_10000.pdb
+++ b/1BRS/EA71Y/mut_04_10000.pdb
--- a/1BRS/EA71Y/mut_05_10000.pdb
+++ b/1BRS/EA71Y/mut_05_10000.pdb
--- a/1BRS/EA71Y/mut_06_10000.pdb
+++ b/1BRS/EA71Y/mut_06_10000.pdb
--- a/1BRS/EA71Y/mut_07_10000.pdb
+++ b/1BRS/EA71Y/mut_07_10000.pdb
--- a/1BRS/EA71Y/mut_08_10000.pdb
+++ b/1BRS/EA71Y/mut_08_10000.pdb
--- a/1BRS/EA71Y/mut_09_10000.pdb
+++ b/1BRS/EA71Y/mut_09_10000.pdb
--- a/1BRS/EA71Y/mut_10_10000.pdb
+++ b/1BRS/EA71Y/mut_10_10000.pdb
--- a/1BRS/EA71Y/mut_11_10000.pdb
+++ b/1BRS/EA71Y/mut_11_10000.pdb
--- a/1BRS/EA71Y/mut_12_10000.pdb
+++ b/1BRS/EA71Y/mut_12_10000.pdb
--- a/1BRS/EA71Y/mut_13_10000.pdb
+++ b/1BRS/EA71Y/mut_13_10000.pdb
--- a/1BRS/EA71Y/mut_14_10000.pdb
+++ b/1BRS/EA71Y/mut_14_10000.pdb
--- a/1BRS/EA71Y/mut_15_10000.pdb
+++ b/1BRS/EA71Y/mut_15_10000.pdb
--- a/1BRS/EA71Y/mut_16_10000.pdb
+++ b/1BRS/EA71Y/mut_16_10000.pdb
--- a/1BRS/EA71Y/mut_17_10000.pdb
+++ b/1BRS/EA71Y/mut_17_10000.pdb
--- a/1BRS/EA71Y/mut_18_10000.pdb
+++ b/1BRS/EA71Y/mut_18_10000.pdb
--- a/1BRS/EA71Y/mut_19_10000.pdb
+++ b/1BRS/EA71Y/mut_19_10000.pdb
--- a/1BRS/EA71Y/mut_20_10000.pdb
+++ b/1BRS/EA71Y/mut_20_10000.pdb
--- a/1BRS/EA71Y/mut_21_10000.pdb
+++ b/1BRS/EA71Y/mut_21_10000.pdb
--- a/1BRS/EA71Y/mut_22_10000.pdb
+++ b/1BRS/EA71Y/mut_22_10000.pdb
--- a/1BRS/EA71Y/mut_23_10000.pdb
+++ b/1BRS/EA71Y/mut_23_10000.pdb
--- a/1BRS/EA71Y/mut_24_10000.pdb
+++ b/1BRS/EA71Y/mut_24_10000.pdb
--- a/1BRS/EA71Y/mut_25_10000.pdb
+++ b/1BRS/EA71Y/mut_25_10000.pdb
--- a/1BRS/EA71Y/mut_26_10000.pdb
+++ b/1BRS/EA71Y/mut_26_10000.pdb
--- a/1BRS/EA71Y/mut_27_10000.pdb
+++ b/1BRS/EA71Y/mut_27_10000.pdb
--- a/1BRS/EA71Y/mut_28_10000.pdb
+++ b/1BRS/EA71Y/mut_28_10000.pdb
--- a/1BRS/EA71Y/mut_29_10000.pdb
+++ b/1BRS/EA71Y/mut_29_10000.pdb
--- a/1BRS/EA71Y/mut_30_10000.pdb
+++ b/1BRS/EA71Y/mut_30_10000.pdb
--- a/1BRS/EA71Y/nataa_mutations.resfile
+++ b/1BRS/EA71Y/nataa_mutations.resfile
+NATAA
+start
+71 A PIKAA Y
--- a/1BRS/EA71Y/wt_01_10000.pdb
+++ b/1BRS/EA71Y/wt_01_10000.pdb
--- a/1BRS/EA71Y/wt_02_10000.pdb
+++ b/1BRS/EA71Y/wt_02_10000.pdb
--- a/1BRS/EA71Y/wt_03_10000.pdb
+++ b/1BRS/EA71Y/wt_03_10000.pdb
--- a/1BRS/EA71Y/wt_04_10000.pdb
+++ b/1BRS/EA71Y/wt_04_10000.pdb
--- a/1BRS/EA71Y/wt_05_10000.pdb
+++ b/1BRS/EA71Y/wt_05_10000.pdb
--- a/1BRS/EA71Y/wt_06_10000.pdb
+++ b/1BRS/EA71Y/wt_06_10000.pdb
--- a/1BRS/EA71Y/wt_07_10000.pdb
+++ b/1BRS/EA71Y/wt_07_10000.pdb
--- a/1BRS/EA71Y/wt_08_10000.pdb
+++ b/1BRS/EA71Y/wt_08_10000.pdb
--- a/1BRS/EA71Y/wt_09_10000.pdb
+++ b/1BRS/EA71Y/wt_09_10000.pdb
--- a/1BRS/EA71Y/wt_10_10000.pdb
+++ b/1BRS/EA71Y/wt_10_10000.pdb
--- a/1BRS/EA71Y/wt_11_10000.pdb
+++ b/1BRS/EA71Y/wt_11_10000.pdb
--- a/1BRS/EA71Y/wt_12_10000.pdb
+++ b/1BRS/EA71Y/wt_12_10000.pdb
--- a/1BRS/EA71Y/wt_13_10000.pdb
+++ b/1BRS/EA71Y/wt_13_10000.pdb
--- a/1BRS/EA71Y/wt_14_10000.pdb
+++ b/1BRS/EA71Y/wt_14_10000.pdb
--- a/1BRS/EA71Y/wt_15_10000.pdb
+++ b/1BRS/EA71Y/wt_15_10000.pdb
--- a/1BRS/EA71Y/wt_16_10000.pdb
+++ b/1BRS/EA71Y/wt_16_10000.pdb
--- a/1BRS/EA71Y/wt_17_10000.pdb
+++ b/1BRS/EA71Y/wt_17_10000.pdb
--- a/1BRS/EA71Y/wt_18_10000.pdb
+++ b/1BRS/EA71Y/wt_18_10000.pdb
--- a/1BRS/EA71Y/wt_19_10000.pdb
+++ b/1BRS/EA71Y/wt_19_10000.pdb
--- a/1BRS/EA71Y/wt_20_10000.pdb
+++ b/1BRS/EA71Y/wt_20_10000.pdb
--- a/1BRS/EA71Y/wt_21_10000.pdb
+++ b/1BRS/EA71Y/wt_21_10000.pdb
--- a/1BRS/EA71Y/wt_22_10000.pdb
+++ b/1BRS/EA71Y/wt_22_10000.pdb
--- a/1BRS/EA71Y/wt_23_10000.pdb
+++ b/1BRS/EA71Y/wt_23_10000.pdb
--- a/1BRS/EA71Y/wt_24_10000.pdb
+++ b/1BRS/EA71Y/wt_24_10000.pdb
--- a/1BRS/EA71Y/wt_25_10000.pdb
+++ b/1BRS/EA71Y/wt_25_10000.pdb
--- a/1BRS/EA71Y/wt_26_10000.pdb
+++ b/1BRS/EA71Y/wt_26_10000.pdb
--- a/1BRS/EA71Y/wt_27_10000.pdb
+++ b/1BRS/EA71Y/wt_27_10000.pdb
--- a/1BRS/EA71Y/wt_28_10000.pdb
+++ b/1BRS/EA71Y/wt_28_10000.pdb
--- a/1BRS/EA71Y/wt_29_10000.pdb
+++ b/1BRS/EA71Y/wt_29_10000.pdb
--- a/1BRS/EA71Y/wt_30_10000.pdb
+++ b/1BRS/EA71Y/wt_30_10000.pdb
--- a/1BRS/YD29F/mut_01_10000.pdb
+++ b/1BRS/YD29F/mut_01_10000.pdb
--- a/1BRS/YD29F/mut_02_10000.pdb
+++ b/1BRS/YD29F/mut_02_10000.pdb
--- a/1BRS/YD29F/mut_03_10000.pdb
+++ b/1BRS/YD29F/mut_03_10000.pdb
--- a/1BRS/YD29F/mut_04_10000.pdb
+++ b/1BRS/YD29F/mut_04_10000.pdb
--- a/1BRS/YD29F/mut_05_10000.pdb
+++ b/1BRS/YD29F/mut_05_10000.pdb
--- a/1BRS/YD29F/mut_06_10000.pdb
+++ b/1BRS/YD29F/mut_06_10000.pdb
--- a/1BRS/YD29F/mut_07_10000.pdb
+++ b/1BRS/YD29F/mut_07_10000.pdb
--- a/1BRS/YD29F/mut_08_10000.pdb
+++ b/1BRS/YD29F/mut_08_10000.pdb
--- a/1BRS/YD29F/mut_09_10000.pdb
+++ b/1BRS/YD29F/mut_09_10000.pdb
--- a/1BRS/YD29F/mut_10_10000.pdb
+++ b/1BRS/YD29F/mut_10_10000.pdb
--- a/1BRS/YD29F/mut_11_10000.pdb
+++ b/1BRS/YD29F/mut_11_10000.pdb
--- a/1BRS/YD29F/mut_12_10000.pdb
+++ b/1BRS/YD29F/mut_12_10000.pdb
--- a/1BRS/YD29F/mut_13_10000.pdb
+++ b/1BRS/YD29F/mut_13_10000.pdb
--- a/1BRS/YD29F/mut_14_10000.pdb
+++ b/1BRS/YD29F/mut_14_10000.pdb
--- a/1BRS/YD29F/mut_15_10000.pdb
+++ b/1BRS/YD29F/mut_15_10000.pdb
--- a/1BRS/YD29F/mut_16_10000.pdb
+++ b/1BRS/YD29F/mut_16_10000.pdb
--- a/1BRS/YD29F/mut_17_10000.pdb
+++ b/1BRS/YD29F/mut_17_10000.pdb
--- a/1BRS/YD29F/mut_18_10000.pdb
+++ b/1BRS/YD29F/mut_18_10000.pdb
--- a/1BRS/YD29F/mut_19_10000.pdb
+++ b/1BRS/YD29F/mut_19_10000.pdb
--- a/1BRS/YD29F/mut_20_10000.pdb
+++ b/1BRS/YD29F/mut_20_10000.pdb
--- a/1BRS/YD29F/mut_21_10000.pdb
+++ b/1BRS/YD29F/mut_21_10000.pdb
--- a/1BRS/YD29F/mut_22_10000.pdb
+++ b/1BRS/YD29F/mut_22_10000.pdb
--- a/1BRS/YD29F/mut_23_10000.pdb
+++ b/1BRS/YD29F/mut_23_10000.pdb
--- a/1BRS/YD29F/mut_24_10000.pdb
+++ b/1BRS/YD29F/mut_24_10000.pdb
--- a/1BRS/YD29F/mut_25_10000.pdb
+++ b/1BRS/YD29F/mut_25_10000.pdb
--- a/1BRS/YD29F/mut_26_10000.pdb
+++ b/1BRS/YD29F/mut_26_10000.pdb
--- a/1BRS/YD29F/mut_27_10000.pdb
+++ b/1BRS/YD29F/mut_27_10000.pdb
--- a/1BRS/YD29F/mut_28_10000.pdb
+++ b/1BRS/YD29F/mut_28_10000.pdb
--- a/1BRS/YD29F/mut_29_10000.pdb
+++ b/1BRS/YD29F/mut_29_10000.pdb
--- a/1BRS/YD29F/mut_30_10000.pdb
+++ b/1BRS/YD29F/mut_30_10000.pdb
--- a/1BRS/YD29F/wt_01_10000.pdb
+++ b/1BRS/YD29F/wt_01_10000.pdb
--- a/1BRS/YD29F/wt_02_10000.pdb
+++ b/1BRS/YD29F/wt_02_10000.pdb
--- a/1BRS/YD29F/wt_03_10000.pdb
+++ b/1BRS/YD29F/wt_03_10000.pdb
--- a/1BRS/YD29F/wt_04_10000.pdb
+++ b/1BRS/YD29F/wt_04_10000.pdb
--- a/1BRS/YD29F/wt_05_10000.pdb
+++ b/1BRS/YD29F/wt_05_10000.pdb
--- a/1BRS/YD29F/wt_06_10000.pdb
+++ b/1BRS/YD29F/wt_06_10000.pdb
--- a/1BRS/YD29F/wt_07_10000.pdb
+++ b/1BRS/YD29F/wt_07_10000.pdb
--- a/1BRS/YD29F/wt_08_10000.pdb
+++ b/1BRS/YD29F/wt_08_10000.pdb
--- a/1BRS/YD29F/wt_09_10000.pdb
+++ b/1BRS/YD29F/wt_09_10000.pdb
--- a/1BRS/YD29F/wt_10_10000.pdb
+++ b/1BRS/YD29F/wt_10_10000.pdb
--- a/1BRS/YD29F/wt_11_10000.pdb
+++ b/1BRS/YD29F/wt_11_10000.pdb
--- a/1BRS/YD29F/wt_12_10000.pdb
+++ b/1BRS/YD29F/wt_12_10000.pdb
--- a/1BRS/YD29F/wt_13_10000.pdb
+++ b/1BRS/YD29F/wt_13_10000.pdb
--- a/1BRS/YD29F/wt_14_10000.pdb
+++ b/1BRS/YD29F/wt_14_10000.pdb
--- a/1BRS/YD29F/wt_15_10000.pdb
+++ b/1BRS/YD29F/wt_15_10000.pdb
--- a/1BRS/YD29F/wt_16_10000.pdb
+++ b/1BRS/YD29F/wt_16_10000.pdb
--- a/1BRS/YD29F/wt_17_10000.pdb
+++ b/1BRS/YD29F/wt_17_10000.pdb
--- a/1BRS/YD29F/wt_18_10000.pdb
+++ b/1BRS/YD29F/wt_18_10000.pdb
--- a/1BRS/YD29F/wt_19_10000.pdb
+++ b/1BRS/YD29F/wt_19_10000.pdb
--- a/1BRS/YD29F/wt_20_10000.pdb
+++ b/1BRS/YD29F/wt_20_10000.pdb
--- a/1BRS/YD29F/wt_21_10000.pdb
+++ b/1BRS/YD29F/wt_21_10000.pdb
--- a/1BRS/YD29F/wt_22_10000.pdb
+++ b/1BRS/YD29F/wt_22_10000.pdb
--- a/1BRS/YD29F/wt_23_10000.pdb
+++ b/1BRS/YD29F/wt_23_10000.pdb
--- a/1BRS/YD29F/wt_24_10000.pdb
+++ b/1BRS/YD29F/wt_24_10000.pdb
--- a/1BRS/YD29F/wt_25_10000.pdb
+++ b/1BRS/YD29F/wt_25_10000.pdb
--- a/1BRS/YD29F/wt_26_10000.pdb
+++ b/1BRS/YD29F/wt_26_10000.pdb
--- a/1BRS/YD29F/wt_27_10000.pdb
+++ b/1BRS/YD29F/wt_27_10000.pdb
--- a/1BRS/YD29F/wt_28_10000.pdb
+++ b/1BRS/YD29F/wt_28_10000.pdb
--- a/1BRS/YD29F/wt_29_10000.pdb
+++ b/1BRS/YD29F/wt_29_10000.pdb
--- a/1BRS/YD29F/wt_30_10000.pdb
+++ b/1BRS/YD29F/wt_30_10000.pdb
--- a/1BRS_features.csv
+++ b/1BRS_features.csv
--- a/1RBS_mudations.csv
+++ b/1RBS_mudations.csv
--- a/Alanine.png
+++ b/Alanine.png
--- a/EA71Y.mov
+++ b/EA71Y.mov
--- a/GlutamicAcid.png
+++ b/GlutamicAcid.png
--- a/PDB.png
+++ b/PDB.png
--- a/PDB2.png
+++ b/PDB2.png
--- a/Tryptophan.png
+++ b/Tryptophan.png
--- a/Warsaw_PM_PPI.ipynb
+++ b/Warsaw_PM_PPI.ipynb
--- a/YD29F.mov
+++ b/YD29F.mov
--- a/backbone.png
+++ b/backbone.png
--- a/distribution.png
+++ b/distribution.png
--- a/new_wt.gif
+++ b/new_wt.gif
--- a/pointmutation.png
+++ b/pointmutation.png