Commits · master · Konstantin Volzhenin / SENSE-PPI · GitLab

08 Jan, 2025 1 commit
- Human-virus dataset update: Negatives were regenerated. The original version… · b6011b2c
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Human-virus dataset update: Negatives were regenerated. The original version used in the SENSE-PPI paper moved to old/
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  Konstantin Volzhenin authored Jan 08, 2025
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20 Sep, 2024 5 commits
- 0.7.5 minor docs updates · f2eb91df
  Konstantin Volzhenin authored Sep 20, 2024
  
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- 0.7.4 minor docs updates · 30da7d71
  Konstantin Volzhenin authored Sep 20, 2024
  
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- 0.7.3 minor docs updates · 29d36e25
  Konstantin Volzhenin authored Sep 20, 2024
  
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- requirements update · 93166be0
  Konstantin Volzhenin authored Sep 20, 2024
  
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- requirements updated · f2004d6e
  Konstantin Volzhenin authored Sep 20, 2024
  
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21 Jun, 2024 1 commit
- 0.7.2 Checkpoint loading in train · b2c43f05
  Konstantin Volzhenin authored Jun 21, 2024
  
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04 May, 2024 2 commits
- Badge changes · 8ec564c9
  Konstantin Volzhenin authored May 04, 2024
  
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- Update LICENSE to CeCILL 2.1 · ceff9fca
  Konstantin Volzhenin authored May 04, 2024
  
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12 Apr, 2024 1 commit
- 0.7.1 datasets renamed + int8 format for labels during dataset reading · 826fc844
  Konstantin Volzhenin authored Apr 12, 2024
  
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18 Mar, 2024 1 commit
- 0.7.0 changes for create_dataset to process custom datasets from files · c6347479
  Konstantin Volzhenin authored Mar 18, 2024
  
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26 Feb, 2024 2 commits
- 0.6.9 version change for the previous commit · 385ebc83
  Konstantin Volzhenin authored Feb 26, 2024
  
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- 0.6.9 create_dataset improved with pandarallel · aa04f16f
  Konstantin Volzhenin authored Feb 26, 2024
  
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07 Feb, 2024 1 commit
- 0.6.8 quick bugfix for tmp files in esm2 · 5b35f1b1
  Konstantin Volzhenin authored Feb 07, 2024
  
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02 Feb, 2024 1 commit
- 0.6.7 removed plt.show() from predict_string · 31ab3524
  Konstantin Volzhenin authored Feb 02, 2024
  
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20 Dec, 2023 1 commit
- 0.6.6 generate_pairs optimized for predict + minor doc edit · d872bf96
  Konstantin Volzhenin authored Dec 20, 2023
  
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19 Dec, 2023 3 commits
- 0.6.5 updated names for tmp files for esm2 and fasta utils · 060842aa
  Konstantin Volzhenin authored Dec 19, 2023
  
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- 0.6.5 updated names for tmp files for predict and predict string · f5945547
  Konstantin Volzhenin authored Dec 19, 2023
  
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- 0.6.4 edits to esm2 params (max_len for truncation) + edits for predict (exceptions + minor things) · 04ca5c16
  Konstantin Volzhenin authored Dec 19, 2023
  
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18 Dec, 2023 3 commits
- 0.6.3 minor doc changes · 0c517ea9
  Konstantin Volzhenin authored Dec 18, 2023
  
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- Dir name changed to "combined datasets" · 9671bf40
  Konstantin Volzhenin authored Dec 18, 2023
  
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- Default model change: from senseppi.ckpt to fly_worm_human_chicken.ckpt · 7fc6206a
  Konstantin Volzhenin authored Dec 18, 2023
  
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12 Dec, 2023 1 commit
- Default model change: from senseppi.ckpt to fly_worm_human_chicken.ckpt · 358ad745
  Konstantin Volzhenin authored Dec 12, 2023
  
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04 Dec, 2023 1 commit
- fly_worm_human_chicken data + model · a7412068
  Konstantin Volzhenin authored Dec 04, 2023
  
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23 Nov, 2023 1 commit
- Args changed (num_nodes) + esm2 path bugfix · 66c1ef29
  Konstantin Volzhenin authored Nov 23, 2023
  
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22 Nov, 2023 1 commit
- small changes in training args · a6c3a6aa
  Konstantin Volzhenin authored Nov 22, 2023
  
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06 Nov, 2023 1 commit
- 0.6.0 minor changes · f2864b0e
  Konstantin Volzhenin authored Nov 06, 2023
  
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05 Oct, 2023 1 commit
- 0.5.9 minor changes · 0999af3c
  Konstantin Volzhenin authored Oct 05, 2023
  
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02 Oct, 2023 2 commits
- 0.5.8 doc changes · 973c7875
  Konstantin Volzhenin authored Oct 02, 2023
  
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- minor doc changes · e87bcae4
  Konstantin Volzhenin authored Oct 02, 2023
  
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29 Sep, 2023 1 commit
- 0.5.7 predictions in output are sorted by score · c963949c
  Konstantin Volzhenin authored Sep 29, 2023
  
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28 Sep, 2023 2 commits
- Readthedocs update · a183543b
  Konstantin Volzhenin authored Sep 28, 2023
  
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- Readthedocs initial commit · 4d750222
  Konstantin Volzhenin authored Sep 28, 2023
  
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26 Sep, 2023 3 commits
- Merge remote-tracking branch 'origin/master' · 0f6fb60a
  Konstantin Volzhenin authored Sep 26, 2023
  
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- added .readthedocs.yaml + minor edits · 9971aeb6
  Konstantin Volzhenin authored Sep 26, 2023
  
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- idp_data added · 1cb63616
  Konstantin Volzhenin authored Sep 26, 2023
  
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22 Sep, 2023 4 commits
- 0.5.6 documentation and parser updates · bae61f93
  Konstantin Volzhenin authored Sep 22, 2023
  
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- Deleted unnecessary print of metrics from predict_string · c5196603
  Konstantin Volzhenin authored Sep 22, 2023
  
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- for some reason np has been deleted from predict_string · 57089d62
  Konstantin Volzhenin authored Sep 22, 2023
  
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- 0.5.5 docs updated · b8fdcb75
  Konstantin Volzhenin authored Sep 22, 2023
  
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