Commits · f2864b0e73af81c50ca4de5d851e131f1b69c280 · Konstantin Volzhenin / SENSE-PPI · GitLab

06 Nov, 2023 1 commit
- 0.6.0 minor changes · f2864b0e
  Konstantin Volzhenin authored Nov 06, 2023
  
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05 Oct, 2023 1 commit
- 0.5.9 minor changes · 0999af3c
  Konstantin Volzhenin authored Oct 05, 2023
  
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02 Oct, 2023 2 commits
- 0.5.8 doc changes · 973c7875
  Konstantin Volzhenin authored Oct 02, 2023
  
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- minor doc changes · e87bcae4
  Konstantin Volzhenin authored Oct 02, 2023
  
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29 Sep, 2023 1 commit
- 0.5.7 predictions in output are sorted by score · c963949c
  Konstantin Volzhenin authored Sep 29, 2023
  
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28 Sep, 2023 2 commits
- Readthedocs update · a183543b
  Konstantin Volzhenin authored Sep 28, 2023
  
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- Readthedocs initial commit · 4d750222
  Konstantin Volzhenin authored Sep 28, 2023
  
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26 Sep, 2023 3 commits
- Merge remote-tracking branch 'origin/master' · 0f6fb60a
  Konstantin Volzhenin authored Sep 26, 2023
  
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- added .readthedocs.yaml + minor edits · 9971aeb6
  Konstantin Volzhenin authored Sep 26, 2023
  
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- idp_data added · 1cb63616
  Konstantin Volzhenin authored Sep 26, 2023
  
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22 Sep, 2023 4 commits
- 0.5.6 documentation and parser updates · bae61f93
  Konstantin Volzhenin authored Sep 22, 2023
  
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- Deleted unnecessary print of metrics from predict_string · c5196603
  Konstantin Volzhenin authored Sep 22, 2023
  
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- for some reason np has been deleted from predict_string · 57089d62
  Konstantin Volzhenin authored Sep 22, 2023
  
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- 0.5.5 docs updated · b8fdcb75
  Konstantin Volzhenin authored Sep 22, 2023
  
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18 Sep, 2023 3 commits
- 0.5.4 some model args and ESM2 args are suppressed · 5b93c030
  Konstantin Volzhenin authored Sep 18, 2023
  
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- 0.5.3 minor updates · 86e49290
  Konstantin Volzhenin authored Sep 18, 2023
  
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- 0.5.2 added 2 models for aphid testing + one of the human_virus models + fly+worm+human dataset · a3782362
  Konstantin Volzhenin authored Sep 18, 2023
  
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11 Sep, 2023 2 commits
- 0.5.1 model bug fix · c46a1436
  Konstantin Volzhenin authored Sep 12, 2023
  
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- 0.5.0 senseppi.ckpt added to the package as a default model · aa239099
  Konstantin Volzhenin authored Sep 12, 2023
  
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08 Sep, 2023 3 commits
- 0.4.1 minor changes · 6f5330e5
  Konstantin Volzhenin authored Sep 08, 2023
  
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- 0.4.0 alpha version of the package that can be pip installed · 3bbd5a03
  Konstantin Volzhenin authored Sep 08, 2023
  
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- c3 classes of HV datasets are deleted · 80345594
  Konstantin Volzhenin authored Sep 08, 2023
  
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05 Sep, 2023 1 commit
- Added additional data for fly+worm training · 3b8c324a
  Konstantin Volzhenin authored Sep 05, 2023
  
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01 Sep, 2023 3 commits
- 0.3.2 bug_fixes for automatic download in create_dataset · 5eab0f2b
  Konstantin Volzhenin authored Sep 01, 2023
  
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- 0.3.2 default params for create_dataset changed · d51c12e8
  Konstantin Volzhenin authored Sep 01, 2023
  
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- 0.3.1 small bugfix for predict_string · fbfc4fc1
  Konstantin Volzhenin authored Sep 01, 2023
  
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08 Aug, 2023 2 commits
- 0.3.0 predict updated. Things to be changed later: fasta file still is edited inplace · 93ff261b
  Konstantin Volzhenin authored Aug 08, 2023
  
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- 0.2.2 fixed tsv bug in predict · 78f70acf
  Konstantin Volzhenin authored Aug 08, 2023
  
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02 Aug, 2023 1 commit
- Added the list of viruses used in training · 4b1847e2
  Konstantin Volzhenin authored Aug 02, 2023
  
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01 Aug, 2023 4 commits
- 0.2.1 forgot to change version in __init__ · bba4c81e
  Konstantin Volzhenin authored Aug 02, 2023
  
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- 0.2.1 changed name of the command "create_dataset". Mps block is put globally in __main__ · ca28b017
  Konstantin Volzhenin authored Aug 02, 2023
  
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- 0.2.0 minor bugfix in tqdm · b73cbabe
  Konstantin Volzhenin authored Aug 02, 2023
  
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- New datasets for different species from STRING (15k pos - 150k neg) · b3efe4de
  Konstantin Volzhenin authored Aug 02, 2023
  
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28 Jul, 2023 1 commit
- 0.1.9 minor bugfix · 2fe8d626
  Konstantin Volzhenin authored Jul 28, 2023
  
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27 Jul, 2023 4 commits
- 0.1.9 minor bugfix · a65a0e1a
  Konstantin Volzhenin authored Jul 27, 2023
  
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- 0.1.9 mps now works but only to compute the ESM2 embeddings, removed redundancy… · 0d2b236c
```
0.1.9 mps now works but only to compute the ESM2 embeddings, removed redundancy in predict_string.py
```
  Konstantin Volzhenin authored Jul 27, 2023
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- 0.1.7 embeddings are computed not from the beginning but only for missing sequences · f7ddda97
  Konstantin Volzhenin authored Jul 27, 2023
  
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- 0.1.7 · ccdf1277
```
GPU running fixed
```
  Konstantin Volzhenin authored Jul 27, 2023
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26 Jul, 2023 2 commits
- 0.1.6 · 52747bde
```
bugfix in params.device
```
  Konstantin Volzhenin authored Jul 26, 2023
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- 0.1.5 · 15fc56cf
```
output contains gene names instead of STRING IDs
```
  Konstantin Volzhenin authored Jul 26, 2023
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