@@ -6,7 +6,7 @@ It is based on embeddings generated by ESM2 and uses Siamese RNN architecture to
## Installation
SENSE-PPI requires Python 3.10 or higher. To install the package, run:
SENSE-PPI requires Python 3.9 or higher. To install the package, run:
```bash
pip install senseppi
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@@ -29,7 +29,7 @@ Predictions are compared with the STRING database. Optionally, the graphs can be
-`create_dataset`: creates a dataset from the STRING database based on the taxonomic ID of the organism.
The original SENSE-PPI repository contains two pretrained models: `senseppi.ckpt` and `dscript.ckpt` pretrained on SENSE-PPI and DSCRIPT human datasets respectively.
The original SENSE-PPI repository contains two pretrained models (checkpoints with weights): `senseppi.ckpt` and `dscript.ckpt` pretrained on SENSE-PPI and DSCRIPT human datasets respectively.
-`senseppi.ckpt` (preferred) : Download from [here](http://gitlab.lcqb.upmc.fr/Konstvv/SENSE-PPI/raw/master/pretrained_models/senseppi.ckpt)
-`dscript.ckpt` : Download from [here](http://gitlab.lcqb.upmc.fr/Konstvv/SENSE-PPI/raw/master/pretrained_models/dscript.ckpt)