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Konstantin Volzhenin
SENSE-PPI
Commits
a6c3a6aa
Commit
a6c3a6aa
authored
Nov 22, 2023
by
Konstantin Volzhenin
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small changes in training args
parent
f2864b0e
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2 changed files
with
4 additions
and
6 deletions
+4
-6
__init__.py
senseppi/__init__.py
+1
-1
train.py
senseppi/commands/train.py
+3
-5
No files found.
senseppi/__init__.py
View file @
a6c3a6aa
__version__
=
"0.6.
0
"
__version__
=
"0.6.
1
"
__author__
=
"Konstantin Volzhenin"
__author__
=
"Konstantin Volzhenin"
from
.
import
model
,
commands
,
esm2_model
,
dataset
,
utils
,
network_utils
from
.
import
model
,
commands
,
esm2_model
,
dataset
,
utils
,
network_utils
...
...
senseppi/commands/train.py
View file @
a6c3a6aa
...
@@ -36,8 +36,8 @@ def main(params):
...
@@ -36,8 +36,8 @@ def main(params):
callbacks
.
append
(
pl
.
callbacks
.
EarlyStopping
(
monitor
=
"val_loss"
,
patience
=
params
.
early_stop
,
callbacks
.
append
(
pl
.
callbacks
.
EarlyStopping
(
monitor
=
"val_loss"
,
patience
=
params
.
early_stop
,
verbose
=
False
,
mode
=
"min"
))
verbose
=
False
,
mode
=
"min"
))
trainer
=
pl
.
Trainer
(
accelerator
=
params
.
device
,
devices
=
params
.
num_devices
,
num_nodes
=
params
.
num_nodes
,
trainer
=
pl
.
Trainer
(
accelerator
=
params
.
device
,
num_nodes
=
params
.
num_nodes
,
max_epochs
=
params
.
num_epochs
,
max_epochs
=
params
.
num_epochs
,
logger
=
logger
,
callbacks
=
callbacks
)
logger
=
logger
,
callbacks
=
callbacks
)
trainer
.
fit
(
model
,
train_set
,
val_set
)
trainer
.
fit
(
model
,
train_set
,
val_set
)
...
@@ -58,11 +58,9 @@ def add_args(parser):
...
@@ -58,11 +58,9 @@ def add_args(parser):
help
=
"Fraction of the training data to use for validation."
)
help
=
"Fraction of the training data to use for validation."
)
train_args
.
add_argument
(
"--seed"
,
type
=
int
,
default
=
None
,
help
=
"Global training seed."
)
train_args
.
add_argument
(
"--seed"
,
type
=
int
,
default
=
None
,
help
=
"Global training seed."
)
train_args
.
add_argument
(
"--num_epochs"
,
type
=
int
,
default
=
100
,
help
=
"Number of training epochs."
)
train_args
.
add_argument
(
"--num_epochs"
,
type
=
int
,
default
=
100
,
help
=
"Number of training epochs."
)
train_args
.
add_argument
(
"--num_devices"
,
type
=
int
,
default
=
1
,
help
=
"Number of devices to use for multi GPU training."
)
train_args
.
add_argument
(
"--num_nodes"
,
type
=
int
,
default
=
1
,
train_args
.
add_argument
(
"--num_nodes"
,
type
=
int
,
default
=
1
,
help
=
"Number of nodes to use for training on a cluster."
)
help
=
"Number of nodes to use for training on a cluster."
)
train_args
.
add_argument
(
"--early_stop"
,
type
=
int
,
default
=
None
,
train_args
.
add_argument
(
"--early_stop"
,
type
=
int
,
default
=
10
,
help
=
"Number of epochs to wait before stopping the training "
help
=
"Number of epochs to wait before stopping the training "
"(tracking is done with validation loss). By default, the is no early stopping."
)
"(tracking is done with validation loss). By default, the is no early stopping."
)
...
...
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