Commit d3d1fb93 by Riccardo Vicedomini

changed some eprint with print

parent b789b9ea
...@@ -28,7 +28,7 @@ class CladeController: ...@@ -28,7 +28,7 @@ class CladeController:
self.cladeCfgParser.read_file(clade_def) # first, read default values (read_file function must be used for those) self.cladeCfgParser.read_file(clade_def) # first, read default values (read_file function must be used for those)
# load user parameters # load user parameters
self.fasta_path = os.path.abspath(args.fasta_path) self.fasta_path = os.path.abspath(args.fasta_path)
eprint(f"[{script_name}] fasta_path: {self.fasta_path}") print(f"[{script_name}] fasta_path: {self.fasta_path}")
self.name = args.name self.name = args.name
self.use_dama = args.use_dama self.use_dama = args.use_dama
self.usr_domain_list = args.usr_domain_list self.usr_domain_list = args.usr_domain_list
...@@ -65,7 +65,7 @@ class CladeController: ...@@ -65,7 +65,7 @@ class CladeController:
if self.clade_root == '' or (not os.path.isdir(self.clade_root)): if self.clade_root == '' or (not os.path.isdir(self.clade_root)):
self.clade_root = clade_def_root self.clade_root = clade_def_root
self.cladeCfgParser.set('DEFAULT',C.CLADE_OPT_ROOT,self.clade_root) self.cladeCfgParser.set('DEFAULT',C.CLADE_OPT_ROOT,self.clade_root)
eprint(f'[{script_name}] MetaCLADE root path: {self.clade_root}') print(f'[{script_name}] MetaCLADE root path: {self.clade_root}')
# Get remaining options which might depend on CLADE's base path # Get remaining options which might depend on CLADE's base path
self.CCMs_path = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_CCMS_PATH) self.CCMs_path = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_CCMS_PATH)
self.CCMs_ext = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_CCMS_EXT) self.CCMs_ext = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_CCMS_EXT)
......
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