small update

metaclade2

@@ -277,7 +277,7 @@ for i in $(seq 1 ${NJOBS}); do
     if [ -f "${f}" ] && [ -s "${f}" ]; then
         CMD="${PEXEC_CMD} ${f}"
         if [ "${MCLADE_USESGE}" = true ]; then
-            qsub $SGE_QUEUEARG $SGE_TIMELIMARG -e "${MCLADE_WORKDIR}/log/filter_${i}.err" -o "${MCLADE_WORKDIR}/log/filter_${i}.out" -cwd -sync yes -N ${MCLADE_JOBNAME} -pe ${SGE_PENAME} ${NTHREADS} -b y "${CMD}" 2>&1 >"${MCLADE_WORKDIR}/log/filter_qsub_${i}.log" &
+            (qsub $SGE_QUEUEARG $SGE_TIMELIMARG -e "${MCLADE_WORKDIR}/log/filter_${i}.err" -o "${MCLADE_WORKDIR}/log/filter_${i}.out" -cwd -sync yes -N ${MCLADE_JOBNAME} -pe ${SGE_PENAME} ${NTHREADS} -b y "${CMD}" &>"${MCLADE_WORKDIR}/log/filter_qsub_${i}.log") &
             pid=$!
             pidarr[$i]=$pid
         else
@@ -304,7 +304,7 @@ print_status "search jobs finished successfully"
 print_status "running architecture job"
 f="${MCLADE_WORKDIR}/jobs/3_arch/${MCLADE_JOBNAME}.sh"
 if [ "${MCLADE_USESGE}" = true ]; then
-    qsub $SGE_QUEUEARG $SGE_TIMELIMARG -e "${MCLADE_WORKDIR}/log/arch.err" -o "${MCLADE_WORKDIR}/log/arch.out" -cwd -sync yes -N ${MCLADE_JOBNAME} -pe ${SGE_PENAME} 1 -b y ${PEXEC_CMD} ${f} 2>&1 >>"${MCLADE_WORKDIR}/log/arch_qsub.log"
+    qsub $SGE_QUEUEARG $SGE_TIMELIMARG -e "${MCLADE_WORKDIR}/log/arch.err" -o "${MCLADE_WORKDIR}/log/arch.out" -cwd -sync yes -N ${MCLADE_JOBNAME} -pe ${SGE_PENAME} 1 -b y ${PEXEC_CMD} ${f} &>"${MCLADE_WORKDIR}/log/arch_qsub.log"
     qret=$?; if ((qret != 0)); then print_error "architecture job failed (exit status: ${qret})"; exit 1; fi
 else
     ${PEXEC_CMD} ${f} 2>"${MCLADE_WORKDIR}/log/arch.out" >"${MCLADE_WORKDIR}/log/arch.err"