metaclade2 now accepts a custom config file to override some default settings

config/mclade.user.cfg

+[metaclade]
+;models_path  = /absolute/path/to/models
+;ccms_path    = /absolute/path/to/models/CCMs
+;hmms_path    = /absolute/path/to/models/HMMs
+;domain_list  = /absolute/path/to/pfam32.domains
+
+[programs]
+;hmmer_path  = "/absolute/path/to/hmmer-3/bin"
+;python_path = "/absolute/path/to/python3/bin"

config/run.example.cfg

-[metaclade]
-ccms_path    = %(clade_root)s/data/models/CCMs
-hmms_path    = %(clade_root)s/data/models/HMMs
-;domain_list  = %(clade_root)s/data/pfamLists/pfam32/pfam32.domains
-
-[programs]
-;hmmer_path  = "/home/vicedomini/software/hmmer-3.2.1/bin"
-;python_path = "/home/riccardo/miniconda3/bin"
-
-[run]
-;use_dama = true