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metaclade2
Commit a1263033 by Riccardo Vicedomini
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using default --cpu value for hmmsearch

parent d43e3691
Showing with 1 additions and 1 deletions
scripts/search_ccms_all.py
...@@ -75,7 +75,7 @@ def main(): ...@@ -75,7 +75,7 @@ def main():
'--noali', '--noali',
'-T', HMMER_VAL_T, '-T', HMMER_VAL_T,
'--domE', HMMER_VAL_DOME, '--domE', HMMER_VAL_DOME,
'--cpu', HMMER_VAL_CPU, #'--cpu', HMMER_VAL_CPU,
'--domtblout', f'{temp_dir}/{args[ACC_ID]}.ccms.domtblout', '--domtblout', f'{temp_dir}/{args[ACC_ID]}.ccms.domtblout',
args[CCMS_PATH], args[FASTA_PATH] ] args[CCMS_PATH], args[FASTA_PATH] ]
hmmsearch_cmd = ' '.join(hmmsearch_args) hmmsearch_cmd = ' '.join(hmmsearch_args)
......
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