Skip to content
Projects
Groups
Snippets
Help
This project
Loading...
Sign in / Register
Toggle navigation
M
metaclade2
Overview
Overview
Details
Activity
Cycle Analytics
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Charts
Issues
0
Issues
0
List
Board
Labels
Milestones
Merge Requests
0
Merge Requests
0
CI / CD
CI / CD
Pipelines
Jobs
Schedules
Charts
Wiki
Wiki
Snippets
Snippets
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Charts
Create a new issue
Jobs
Commits
Issue Boards
Open sidebar
Riccardo Vicedomini
metaclade2
Commits
998de300
Commit
998de300
authored
Nov 08, 2020
by
Riccardo Vicedomini
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
minor update in output and cfg files
parent
17895f2f
Show whitespace changes
Inline
Side-by-side
Showing
2 changed files
with
4 additions
and
3 deletions
+4
-3
mclade.default.cfg
config/mclade.default.cfg
+3
-2
metaclade2
metaclade2
+1
-1
No files found.
config/mclade.default.cfg
View file @
998de300
...
...
@@ -4,7 +4,8 @@
mclade_root =
[metaclade]
models_path = /data2/home/vicedomini/databases/metaclade2/models
models_path = /home/blachon/Documents/Tools/MetaCLADE_models/models
;ccms_path = /home/vicedomini/projects/metaclade2/data/models/CCMsRed
ccms_path = %(models_path)s/CCMs
ccms_ext = .hmm.gz
hmms_path = %(models_path)s/HMMs
...
...
@@ -30,7 +31,7 @@ dama_arch = %(scripts_path)s/dama_arch.py
hmmsearch_exec = hmmsearch
;python_path =
python_exec = python3
dama_path = /
share/app
s/DAMA/Release/src
dama_path = /
home/blachon/Documents/Tool
s/DAMA/Release/src
dama_exec = DAMA
[run]
...
...
metaclade2
View file @
998de300
...
...
@@ -264,7 +264,7 @@ if [ $? -ne 0 ]; then
fi
print_status
"MetaCLADE working directory:
${
MCLADE_WORKDIR
}
"
if
[
-z
"
${
MCLADE_OUTFILE
}
"
]
;
then
MCLADE_OUTFILE
=
"
${
MCLADE_WORKDIR
}
"
/
"
${
MCLADE_JOBNAME
}
"
.arch.t
xt
;
fi
if
[
-z
"
${
MCLADE_OUTFILE
}
"
]
;
then
MCLADE_OUTFILE
=
"
${
MCLADE_WORKDIR
}
"
/
"
${
MCLADE_JOBNAME
}
"
.arch.t
sv
;
fi
print_status
"output will be saved to:
${
MCLADE_OUTFILE
}
"
# Create MetaCLADE scripts
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment