Commit 8f9ed6a3 by Riccardo Vicedomini

corrected the example in readme

parent 8a24a867
...@@ -131,14 +131,14 @@ Each annotation has the following fields: ...@@ -131,14 +131,14 @@ Each annotation has the following fields:
A test dataset is available in the `test` directory and can be run with the following command: A test dataset is available in the `test` directory and can be run with the following command:
``` ```
cd [METACLADE2_DIR] cd [METACLADE2_DIR]
metaclade2 -i ./test/test.fa -N testDataSet -d PF00875,PF03441,PF03167,PF12546 -W ./ -j 2 metaclade2 -i ./test/test.fa -N testDataSet -d PF00875,PF03441,PF03167,PF12546 -W ./test -j 2
``` ```
This will create at most two scrips (jobs) in each directory of the pipeline. This will create at most two scrips (jobs) in each directory of the pipeline.
Alternatively, if you are running MetaCLADE2 in a SGE cluster, the following script will run at most 2 jobs, each one using 2 CPUs, for each step of the pipeline: Alternatively, if you are running MetaCLADE2 in a SGE cluster, the following script will run at most 2 jobs, each one using 2 CPUs, for each step of the pipeline:
``` ```
cd [METACLADE2_DIR] cd [METACLADE2_DIR]
metaclade2 -i ./test/test.fa -N testDataSet -d PF00875,PF03441,PF03167,PF12546 -W ./ --sge --pe smp -j 2 -t 2 metaclade2 -i ./test/test.fa -N testDataSet -d PF00875,PF03441,PF03167,PF12546 -W ./test --sge --pe smp -j 2 -t 2
``` ```
Results will be stored in the `[METACLADE2_DIR]/test/testDataSet/results` directory. Results will be stored in the `[METACLADE2_DIR]/test/testDataSet/results` directory.
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