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Mustafa Tekpinar
PRESCOTT
Commits
fd1557f5
Commit
fd1557f5
authored
Jun 13, 2023
by
Mustafa Tekpinar
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Trying to solve importlib.resource files problem.
parent
12d7708d
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2 changed files
with
9 additions
and
5 deletions
+9
-5
Dockerfile
Dockerfile
+9
-3
setup.py
setup.py
+0
-2
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Dockerfile
View file @
fd1557f5
...
@@ -26,8 +26,6 @@ RUN apt-get update --fix-missing && \
...
@@ -26,8 +26,6 @@ RUN apt-get update --fix-missing && \
apt-get install
-y
--no-install-recommends
apt-utils
&&
\
apt-get install
-y
--no-install-recommends
apt-utils
&&
\
apt-get install
-y
software-properties-common
&&
\
apt-get install
-y
software-properties-common
&&
\
apt-get install
-y
build-essential
&&
\
apt-get install
-y
build-essential
&&
\
apt-get install
-y
python3-dev
&&
\
apt-get install
-y
python3-pip
&&
\
apt-get install
-y
r-base r-base-core
&&
\
apt-get install
-y
r-base r-base-core
&&
\
apt-get install
-y
muscle
&&
\
apt-get install
-y
muscle
&&
\
apt-get install
-y
dssp
&&
\
apt-get install
-y
dssp
&&
\
...
@@ -39,6 +37,14 @@ apt-get install -y wget && \
...
@@ -39,6 +37,14 @@ apt-get install -y wget && \
apt-get install csh
&&
\
apt-get install csh
&&
\
apt-get install
-y
hmmer
&&
\
apt-get install
-y
hmmer
&&
\
apt-get clean
&&
rm
-rf
/var/lib/apt/lists/
*
/tmp/
*
/var/tmp/
*
apt-get clean
&&
rm
-rf
/var/lib/apt/lists/
*
/tmp/
*
/var/tmp/
*
RUN
add-apt-repository ppa:deadsnakes/ppa
RUN
apt-get update
--fix-missing
&&
\
apt-get
-y
install python3.9
&&
\
apt-get install
-y
python3-dev
&&
\
apt-get install
-y
python3-pip
&&
\
apt-get clean
&&
rm
-rf
/var/lib/apt/lists/
*
/tmp/
*
/var/tmp/
*
###################################################################
###################################################################
RUN
wget https://github.com/soedinglab/hh-suite/releases/download/v3.3.0/hhsuite-3.3.0-AVX2-Linux.tar.gz
RUN
wget https://github.com/soedinglab/hh-suite/releases/download/v3.3.0/hhsuite-3.3.0-AVX2-Linux.tar.gz
RUN
mkdir hhsuite
RUN
mkdir hhsuite
...
@@ -49,7 +55,7 @@ RUN tar xvfz hhsuite-3.3.0-AVX2-Linux.tar.gz
...
@@ -49,7 +55,7 @@ RUN tar xvfz hhsuite-3.3.0-AVX2-Linux.tar.gz
ENV
PATH="/home/tekpinar/research/lcqb/hhsuite/bin:/home/tekpinar/research/lcqb/hhsuite/scripts:$PATH"
ENV
PATH="/home/tekpinar/research/lcqb/hhsuite/bin:/home/tekpinar/research/lcqb/hhsuite/scripts:$PATH"
RUN
rm
-f
hhsuite-3.3.0-AVX2-Linux.tar.gz
RUN
rm
-f
hhsuite-3.3.0-AVX2-Linux.tar.gz
RUN
ln
-s
/usr/bin/python3 /usr/bin/python
RUN
ln
-s
/usr/bin/python3
.9
/usr/bin/python
WORKDIR
/home/tekpinar/research/lcqb
WORKDIR
/home/tekpinar/research/lcqb
RUN
pip3 install
-e
./ESGEMME/
RUN
pip3 install
-e
./ESGEMME/
...
...
setup.py
View file @
fd1557f5
...
@@ -45,8 +45,6 @@ setup(name='esgemme',
...
@@ -45,8 +45,6 @@ setup(name='esgemme',
'Environment :: Console'
,
'Environment :: Console'
,
'Operating System :: POSIX'
,
'Operating System :: POSIX'
,
'Programming Language :: Python :: 3'
,
'Programming Language :: Python :: 3'
,
'Programming Language :: Python :: 3.7'
,
'Programming Language :: Python :: 3.8'
,
'Programming Language :: Python :: 3.9'
,
'Programming Language :: Python :: 3.9'
,
'License :: OSI Approved :: MIT License'
,
'License :: OSI Approved :: MIT License'
,
'Intended Audience :: Science/Research'
,
'Intended Audience :: Science/Research'
,
...
...
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