Removed local SGEMME_DEV_PATH calls.

sgemme.py

@@ -235,13 +235,12 @@ def launchJET(prot, retMet, bFile, fFile, pdbfile, chains, n, N, nl):
 
 # Run Rscript to compute predictions
 def launchPred(prot,inAli,mutFile, normWeightMode, alphabet):
-    SGEMME_DEV_PATH="/home/tekpinar/research/lcqb/SGEMME-dev-ss-based-jetormax"
     if (mutFile!=''):
-	    rcmd="Rscript --save "+SGEMME_DEV_PATH+"/computePred.R "+prot+" "+inAli+" FALSE "+mutFile+" "+normWeightMode+" "+alphabet
+	    rcmd="Rscript --save $SGEMME_PATH/computePred.R "+prot+" "+inAli+" FALSE "+mutFile+" "+normWeightMode+" "+alphabet
     
     #TODO: remember that there is a problem here!!!! 
     else:
-        rcmd="Rscript --save "+SGEMME_DEV_PATH+"/computePred.R "+prot+" "+inAli+" TRUE none "+normWeightMode+" "+alphabet
+        rcmd="Rscript --save $SGEMME_PATH/computePred.R "+prot+" "+inAli+" TRUE none "+normWeightMode+" "+alphabet
 
     print("\nRunning: \n"+rcmd)
     reCode=subprocess.call(rcmd,shell=True)