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Mustafa Tekpinar
PRESCOTT
Commits
e6303622
Commit
e6303622
authored
May 26, 2023
by
Mustafa Tekpinar
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Changed Dockerfile slightly to include more tools.
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fe0d5632
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e6303622
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@@ -14,6 +14,7 @@ COPY ./ESGEMME/computePred.R ./ESGEMME/computePred.R
...
@@ -14,6 +14,7 @@ COPY ./ESGEMME/computePred.R ./ESGEMME/computePred.R
COPY
./ESGEMME/default.conf ./ESGEMME/default.conf
COPY
./ESGEMME/default.conf ./ESGEMME/default.conf
COPY
./ESGEMME/data/ ./ESGEMME/data/
COPY
./ESGEMME/data/ ./ESGEMME/data/
COPY
./ESGEMME/examples/ ./ESGEMME/examples/
COPY
./ESGEMME/examples/ ./ESGEMME/examples/
COPY
./demust/ ./demust/
###################################################################
###################################################################
RUN
apt-get update
--fix-missing
&&
\
RUN
apt-get update
--fix-missing
&&
\
...
@@ -33,10 +34,13 @@ apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
...
@@ -33,10 +34,13 @@ apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
RUN
ln
-s
/usr/bin/python3 /usr/bin/python
RUN
ln
-s
/usr/bin/python3 /usr/bin/python
RUN
pip3 install
--no-cache-dir
prody matplotlib scipy pandas biotite
RUN
pip3 install
--no-cache-dir
prody matplotlib scipy pandas biotite
RUN
pip3 install
-e
./demust/
RUN
Rscript
-e
'install.packages("seqinr", repos="http://cran.us.r-project.org", dependencies=TRUE)'
RUN
Rscript
-e
'install.packages("seqinr", repos="http://cran.us.r-project.org", dependencies=TRUE)'
# Build command
# Build command
# sudo docker build -t tekpinar/esgemme-docker:v1.3.0 .
# sudo docker build -t tekpinar/esgemme-docker:v1.3.0 .
# sudo docker login
# sudo docker push tekpinar/esgemme-docker:v1.3.0
# Pull command on M1 Mac with macOS Monterey
# Pull command on M1 Mac with macOS Monterey
# docker pull tekpinar/esgemme-docker:v1.3.0
# docker pull tekpinar/esgemme-docker:v1.3.0
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