Commit e6303622 by Mustafa Tekpinar

Changed Dockerfile slightly to include more tools.

parent fe0d5632
...@@ -14,6 +14,7 @@ COPY ./ESGEMME/computePred.R ./ESGEMME/computePred.R ...@@ -14,6 +14,7 @@ COPY ./ESGEMME/computePred.R ./ESGEMME/computePred.R
COPY ./ESGEMME/default.conf ./ESGEMME/default.conf COPY ./ESGEMME/default.conf ./ESGEMME/default.conf
COPY ./ESGEMME/data/ ./ESGEMME/data/ COPY ./ESGEMME/data/ ./ESGEMME/data/
COPY ./ESGEMME/examples/ ./ESGEMME/examples/ COPY ./ESGEMME/examples/ ./ESGEMME/examples/
COPY ./demust/ ./demust/
################################################################### ###################################################################
RUN apt-get update --fix-missing && \ RUN apt-get update --fix-missing && \
...@@ -33,10 +34,13 @@ apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* ...@@ -33,10 +34,13 @@ apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
RUN ln -s /usr/bin/python3 /usr/bin/python RUN ln -s /usr/bin/python3 /usr/bin/python
RUN pip3 install --no-cache-dir prody matplotlib scipy pandas biotite RUN pip3 install --no-cache-dir prody matplotlib scipy pandas biotite
RUN pip3 install -e ./demust/
RUN Rscript -e 'install.packages("seqinr", repos="http://cran.us.r-project.org", dependencies=TRUE)' RUN Rscript -e 'install.packages("seqinr", repos="http://cran.us.r-project.org", dependencies=TRUE)'
# Build command # Build command
# sudo docker build -t tekpinar/esgemme-docker:v1.3.0 . # sudo docker build -t tekpinar/esgemme-docker:v1.3.0 .
# sudo docker login
# sudo docker push tekpinar/esgemme-docker:v1.3.0
# Pull command on M1 Mac with macOS Monterey # Pull command on M1 Mac with macOS Monterey
# docker pull tekpinar/esgemme-docker:v1.3.0 # docker pull tekpinar/esgemme-docker:v1.3.0
......
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