Added custom frequency file input option.

d1e78426 · Mustafa Tekpinar · 05a0fb8c · d1e78426 · d1e78426 · d1e78426
Commit d1e78426 authored Mar 05, 2024 by Mustafa Tekpinar
Showing with 3 additions and 0 deletions

custom-frequency-file.txt data/custom-frequency-file.txt +0 -0

example-prescott-script.sh examples/example-prescott-script.sh +3 -0

prescott.py prescott/prescott.py +0 -0

No files found.
--- a/data/custom-frequency-file.txt
+++ b/data/custom-frequency-file.txt
--- a/examples/example-prescott-script.sh
+++ b/examples/example-prescott-script.sh
@@ -5,3 +5,6 @@

 #If you are using GnomAD v4.0.0 data.
 prescott -e ../data/MLH1_normPred_evolCombi.txt -g ../data/gnomAD_v4.0.0_MLH1_HUMAN_ENSG00000076242.csv -s ../data/MLH1.fasta
+
+#If you have a custom frequency file
+#prescott -e ../data/MLH1_normPred_evolCombi.txt -g ../data/custom-frequency-file.txt -s ../data/MLH1.fasta
--- a/prescott/prescott.py
+++ b/prescott/prescott.py