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Mustafa Tekpinar
PRESCOTT
Commits
b537f05c
Commit
b537f05c
authored
Oct 04, 2023
by
Mustafa Tekpinar
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Added Singularityfile.sh to the repository.
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#!/bin/bash
#You can not run docker on many high performance computing systems
#due to sudo permissions etc.
#However, singularity can be run on them. Due to this reason, I prepared
#this file to show how you can prepare a singulartiy sif file from docker
#image of PRESCOTT.
#STEP 0: First thing first! You must have singularity installed on your system.
# If not, you can find the installation instructions here:
# https://github.com/sylabs/singularity/blob/main/INSTALL.md
# In addition, there are different releases(deb, rpm or source) in the following page:
# https://github.com/sylabs/singularity/releases
#STEP 1: Building singularity sandbox from the docker image online:
# Please note that you will need to change (v1.5.0) to the version you want
# if there is an update in the version.
singularity build
--sandbox
prescott-docker-v1.5.0 docker://tekpinar/prescott-docker:v1.5.0
#STEP 2: Converting the folder to a single sif file:
singularity build prescott-docker-v1.5.0.sif prescott-docker-v1.5.0
#STEP 3: Running escott with the sif file:
singularity
exec
prescott-docker-v1.5.0.sif escott
-h
#STEP 4: Running prescott with the sif file:
singularity
exec
prescott-docker-v1.5.0.sif prescott
-h
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