Commit a46cad97 by Mustafa Tekpinar

Changed max_load from 2*10^6 to 8*10^6.

parent 9fa8780f
...@@ -87,12 +87,10 @@ ESGEMME has the following external dependencies: ...@@ -87,12 +87,10 @@ ESGEMME has the following external dependencies:
- muscle: https://www.drive5.com/muscle/ - muscle: https://www.drive5.com/muscle/
** **
* seqinr R package: https://cran.r-project.org/web/packages/seqinr/index.html * seqinr R package: https://cran.r-project.org/web/packages/seqinr/index.html
* dssp for secondary structure prediction.
These tools should be installed to be able to use ESGEMME. These tools should be installed to be able to use ESGEMME.
# Cite # Cite
Laine E, Karami Y, Carbone A. GEMME: A Simple and Fast Global Epistatic Model Predicting Mutational Effects. Molecular Biology and Evolution, Volume 36, Issue 11, November 2019, Pages 2604–2619 Laine E, Karami Y, Carbone A. GEMME: A Simple and Fast Global Epistatic Model Predicting Mutational Effects. Molecular Biology and Evolution, Volume 36, Issue 11, November 2019, Pages 2604–2619
...@@ -20,7 +20,7 @@ url http://www.rcsb.org/pdb/downloadFile.do URL of PDB server ...@@ -20,7 +20,7 @@ url http://www.rcsb.org/pdb/downloadFile.do URL of PDB server
>Filter >Filter
min_identity 0.20 min sequence identity min_identity 0.20 min sequence identity
max_identity 0.98 max sequence identity max_identity 0.98 max sequence identity
max_load 2000000 max CPU load max_load 8000000 max CPU load
***************************************** *****************************************
>Sample >Sample
length_cutoff 0.8 minimum sequence length expressed in number of residues length_cutoff 0.8 minimum sequence length expressed in number of residues
......
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