Moved getNbSeq function from gemmeAnal.py to sgemme.py.

gemmeAnal.py

@@ -42,17 +42,17 @@ import numpy as np
 # 	return prot,seq,i-1
 
 
-def getNbSeq(filename):
-	#TODO: Remove bash dependency and count the sequences within Python!
-	"""
-		# Get the number of sequences in a multi-fasta file
+# def getNbSeq(filename):
+# 	#TODO: Remove bash dependency and count the sequences within Python!
+# 	"""
+# 		# Get the number of sequences in a multi-fasta file
 		
-	"""
-	if filename!='':
-		proc=subprocess.Popen("grep -c '^>' "+filename,stdout=subprocess.PIPE,shell=True)
-		return int(proc.stdout.read())
-	else:
-		return 0
+# 	"""
+# 	if filename!='':
+# 		proc=subprocess.Popen("grep -c '^>' "+filename,stdout=subprocess.PIPE,shell=True)
+# 		return int(proc.stdout.read())
+# 	else:
+# 		return 0
 
 def createPDB(prot,seq):
 	"""

sgemme.py

@@ -47,6 +47,18 @@ def extractQuerySeq(filename):
 			i = i + 1
 	fOUT.close()
 	return prot,seq,i-1
+
+def getNbSeq(filename):
+	#TODO: Remove bash dependency and count the sequences within Python!
+	"""
+		# Get the number of sequences in a multi-fasta file
+		
+	"""
+	if filename!='':
+		proc=subprocess.Popen("grep -c '^>' "+filename,stdout=subprocess.PIPE,shell=True)
+		return int(proc.stdout.read())
+	else:
+		return 0
 ###############################################################################
 def rankSortProteinData(dataArray, inverted=True):
     """