Now, checking if normalized data files are created or not for figs.

gemme.py

@@ -310,17 +310,32 @@ def doit(inAli,mutFile,retMet,bFile,fFile,n,N, isjet2on):
 
     if(simple):
         print("generating the plots...")
-        gemmeData = parseGEMMEoutput(prot+"_normPred_evolEpi.txt", verbose=False)
-        plotGEMMEmatrix(gemmeData, prot+"_normPred_evolEpi.png", 1, None,\
-                        colorMap='Blues_r', offSet=0, pixelType='square')
+        #Check if the normalized data files were created. 
+        if(os.path.exists(prot+"_normPred_evolEpi.txt")):
+            gemmeData = parseGEMMEoutput(prot+"_normPred_evolEpi.txt", verbose=False)
+            plotGEMMEmatrix(gemmeData, prot+"_normPred_evolEpi.png", 1, None,\
+                            colorMap='Blues_r', offSet=0, pixelType='square')
+        else:
+            print("ERROR: "+prot+"_normPred_evolEpi.txt file does not exist!")
+            print("       Can not generate "+prot+"_normPred_evolEpi.png file!")
         
-        gemmeData = parseGEMMEoutput(prot+"_normPred_evolInd.txt", verbose=False)
-        plotGEMMEmatrix(gemmeData, prot+"_normPred_evolInd.png", 1, None,\
-                        colorMap='Greens_r', offSet=0, pixelType='square')
-
-        gemmeData = parseGEMMEoutput(prot+"_normPred_evolCombi.txt", verbose=False)
-        plotGEMMEmatrix(gemmeData, prot+"_normPred_evolCombi.png", 1, None,\
-                        colorMap='Oranges_r', offSet=0, pixelType='square')
+        #Check if the normalized data files were created. 
+        if(os.path.exists(prot+"_normPred_evolInd.txt")):
+            gemmeData = parseGEMMEoutput(prot+"_normPred_evolInd.txt", verbose=False)
+            plotGEMMEmatrix(gemmeData, prot+"_normPred_evolInd.png", 1, None,\
+                            colorMap='Greens_r', offSet=0, pixelType='square')
+        else:
+            print("ERROR: "+prot+"_normPred_evolInd.txt file does not exist!")
+            print("       Can not generate "+prot+"_normPred_evolInd.png file!")
+
+        #Check if the normalized data files were created. 
+        if(os.path.exists(prot+"_normPred_evolCombi.txt")):        
+            gemmeData = parseGEMMEoutput(prot+"_normPred_evolCombi.txt", verbose=False)
+            plotGEMMEmatrix(gemmeData, prot+"_normPred_evolCombi.png", 1, None,\
+                            colorMap='Oranges_r', offSet=0, pixelType='square')
+        else:
+            print("ERROR: "+prot+"_normPred_evolCombi.txt file does not exist!")
+            print("       Can not generate "+prot+"_normPred_evolCombi.png file!")
         print("done")
 
     cleanTheMess(prot,bFile,fFile)