Commits · master · Edoardo SARTI / profileview · GitLab

31 May, 2022 2 commits
- Merge branch 'master' of http://gitlab.lcqb.upmc.fr/Sarti/profileview · b40a6849
  Djeser Kordon (edoardo Carbone) authored May 31, 2022
  
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- parallelization modif · 53490d34
  Djeser Kordon (edoardo Carbone) authored May 31, 2022
  
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10 May, 2022 2 commits
- Delete sequencefamillebromodomaine2align2.phy_phyml_tree.txt.wl.nhx · 5b25b918
  Djeser Kordon authored May 10, 2022
  
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- Upload New File · e4867356
  Djeser Kordon authored May 10, 2022
  
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23 Mar, 2022 1 commit
- creation de readme · 42e60f66
  Djeser Kordon (edoardo Carbone) authored Mar 23, 2022
  
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01 Apr, 2021 1 commit
- fixed print of error if hhblits database directory cannot be found · 1fc60f5f
  Riccardo Vicedomini authored Apr 01, 2021
  
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19 Jul, 2020 1 commit
- minor fix for query filenames used by profilview-build · 1df7b991
  Riccardo Vicedomini authored Jul 19, 2020
  
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13 May, 2020 3 commits
- operating system is now correctly checked · ffeab516
  Riccardo Vicedomini authored May 13, 2020
  
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- attempt to fix macOS problem with mktemp · b5096d70
  Riccardo Vicedomini authored May 13, 2020
  
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- attempt to fix macOS problem with getopt · 8113881f
  Riccardo Vicedomini authored May 13, 2020
  
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26 Jul, 2019 3 commits
- Updated version date · aaa40ffe
  Riccardo Vicedomini authored Jul 26, 2019
  
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- Added two new options (minimum explained variance for PC clustering and number… · e40a6415
```
Added two new options (minimum explained variance for PC clustering and number of best matching models for library reduction)
```
  Riccardo Vicedomini authored Jul 26, 2019
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- Print message about number of PCs considered for the chosen minimum explained variance · f01e2972
  Riccardo Vicedomini authored Jul 26, 2019
  
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19 Jul, 2019 2 commits
- skip logo generation if there are no conserved positions only for the appropriate logo · 3fc1e4da
  Riccardo Vicedomini authored Jul 19, 2019
  
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- skip logo generation if there are no conserved positions · cfb5aa85
  Riccardo Vicedomini authored Jul 19, 2019
  
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10 Jul, 2019 5 commits
- updated AUTHORS file · 1e4024b8
  Riccardo Vicedomini authored Jul 10, 2019
  
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- added more details to the AUTHORS list · 930b676a
  Riccardo Vicedomini authored Jul 10, 2019
  
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- allow user to omit the leading 0 in --cvar parameter · c4c7fcc6
  Riccardo Vicedomini authored Jul 10, 2019
  
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- updated version date · 39d203f4
  Riccardo Vicedomini authored Jul 10, 2019
  
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- added (hidden) parameter that allows to specify minimum cumulative variance of… · 3d16265e
```
added (hidden) parameter that allows to specify minimum cumulative variance of principal components, before the hierarchical clustering
```
  Riccardo Vicedomini authored Jul 10, 2019
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28 Jun, 2019 2 commits
- updated version information · b13148d3
  Riccardo Vicedomini authored Jun 28, 2019
  
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- added (hidden) parameters to change hhblits arguments · d56145c8
  Riccardo Vicedomini authored Jun 28, 2019
  
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27 Jun, 2019 7 commits
- fixed wrong display of execution time in HMM library construction · fe4b2667
  Riccardo Vicedomini authored Jun 27, 2019
  
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- fixed a problem in model library construction due to a syntax problem · 7afbbfe4
  Riccardo Vicedomini authored Jun 27, 2019
  
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- fixed a bug due to long indels during hmmsearch output processing · fe5e6cb0
  Riccardo Vicedomini authored Jun 27, 2019
  
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- added a .gitignore file that excludes python cache files from git tracking · d4e32bba
  Riccardo Vicedomini authored Jun 27, 2019
  
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- updated version information · 83a8b447
  Riccardo Vicedomini authored Jun 27, 2019
  
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- hmmsearch output is now compressed while it's being generated · 8dba0a4a
  Riccardo Vicedomini authored Jun 27, 2019
  
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- fixed a bug in parsing hmmsearch output when a '== domain' block does not contain a hit/alignment · 11260ff8
  Riccardo Vicedomini authored Jun 27, 2019
  
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26 Jun, 2019 1 commit
- removed unused parameter in profileview-tree and updated version date · d851d812
  Riccardo Vicedomini authored Jun 26, 2019
  
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31 May, 2019 2 commits
- Removed python cache dir · b2f62c24
  vice1987 authored May 31, 2019
  
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- First commit · ed79a631
  vice1987 authored May 31, 2019
  
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