Commit 5b25b918 by Djeser Kordon

Delete sequencefamillebromodomaine2align2.phy_phyml_tree.txt.wl.nhx

parent e4867356
(((((((((((((((((((((((((((((((BRDT_Neophocaena:0.0100904,(BRDT_Delphinapterus:0.0114332,BRDT_Orcinus:0.00163231)1:0.0118618)1:0.00893889,BRDT_Lipotes:0.00584514)1:0.00439719,(BRDT_Sus:0.0332105,(BRDT_Ceratotherium:0.0188065,BRDT_Equus:0.0203531)1:0.0124812)1:0.00292842)1:0.00278429,((BRDT_Oryx:0.0135706,BRDT_Bos:1e-08)1:0.00026391,(BRDT_Chrysochloris:0.01271,(BRDT_Trichechus:0.0131839,BRDT_Loxodonta:1e-08)1:0.00056855)1:0.0126219)1:0.00020218)1:0.00073795,(BRDT_Hyaena:0.00246528,(((BRDT_Suricata:0.00094496,(BRDT_Acinonyx:0.012933,BRDT_Felis:0.00054968)1:0.0253526)1:0.0122554,(BRDT_Odobenus:1e-08,BRDT_Ailuropoda:0.00027704)1:0.014057)1:0.0032508,(BRDT_Vulpes:0.00680757,BRDT_Canis:0.00626489)1:0.00973234)1:0.00789805)1:0.0109399)1:0.00072889,(((BRDT_Choloepus:0.0250608,(BRDT_Castor:0.0298226,BRDT_Dipodomys:0.0100182)1:0.00724028)1:0.00234902,(BRDT_Vicugna:0.00161153,BRDT_Camelus:0.011677)1:0.0369939)1:0.00828237,((((((BRDT_Arvicola:0.0593401,(BRDT_Peromyscus:0.0120662,BRDT_Peromyscus:0.0011729)1:0.0100675)1:0.00101687,((BRDT_Onychomys:1e-08,BRDT_Meriones:0.00010568)1:5.69e-05,BRDT_Cricetulus:1e-08)1:0.00239544)1:0.00270242,((((((BRDT_Rattus:1e-08,BRDT_Rattus:0.0276689)1:0.040352,BRDT_Mus:0.0117122)1:0.00282071,BRDT_Mus:0.015945)1:0.00997827,BRDT_Grammomys:0.00016256)1:0.00126443,BRDT_Mastomys:0.0113555)1:0.0181603,(BRDT_Galeopterus:0.0459338,BRDT_Sorex:0.032793)1:0.00022966)1:0.0101723)1:0.00207172,BRDT_Oryctolagus:0.00737379)1:0.00101998,BRDT_Ictidomys:0.0196307)1:0.00468809,((((((((BRDT_Sapajus:1e-08,BRDT_Cebus:0.0144112)1:0.00365114,BRDT_Aotus:0.0178381)1:0.00759481,BRDT_Saimiri:0.00617628)1:0.00738134,BRDT_Callithrix:1e-08)1:0.0251205,((((BRDT_Hylobates:0.0134177,BRDT_Pongo:1e-08)1:0.00085407,BRDT_Homo:0.0122228)1:0.00501939,(BRDT_Gorilla:0.00800303,BRDT_Pan:0.00517609)1:0.00137733)1:0.00532557,(BRDT_Chlorocebus:0.0133684,BRDT_Macaca:1e-08)1:0.00120766)1:0.00165003)1:0.00507529,BRDT_Piliocolobus:0.0064186)1:0.0104014,(BRDT_Microcebus:0.0253661,(BRDT_Propithecus:0.0131002,BRDT_Otolemur:0.0127548)1:0.00156411)1:0.00169345)1:0.0100976,BRDT_Ochotona:1.4e-07)1:0.0012427)1:0.00461697)1:0.00584656)1:0.00049663,((BRDT_Talpa:0.0120587,BRDT_Condylura:0.00092418)1:0.00575542,((BRDT_Manis:0.00679404,BRDT_Manis:0.00612871)1:0.0197878,(BRDT_Heterocephalus:0.0354389,(BRDT_Octodon:1e-08,BRDT_Cavia:0.0136081)1:0.00866038)1:0.027525)1:0.00480067)1:0.00538567)1:0.00398086,BRDT_Erinaceus:0.0349358)1:0.0078841,(((((BRDT_Artibeus:0.033042,BRDT_Pteropus:0.00794458)1:0.00517159,(BRDT_Rousettus:0.00168653,BRDT_Pteropus:0.0246492)1:0.0129562)1:0.0092043,(BRDT_Rhinolophus:0.00054721,BRDT_Desmodus:0.0266917)1:0.0106305)1:0.00299135,BRDT_Hipposideros:0.0125945)1:0.00634636,(((BRDT_Myotis:0.0152258,BRDT_Myotis:1e-08)1:0.00166869,BRDT_Myotis:0.0117622)1:0.0306798,(BRDT_Pipistrellus:0.00601996,BRDT_Eptesicus:0.00725202)1:0.011352)1:0.0215625)1:0.00772217)1:0.0278064,BRDT_Monodelphis:0.102789)1:0.0407595,(((((BRDT_Crotalus:0.0151,BRDT_Thamnophis:1e-08)1:0.01695,BRDT_Pantherophis:0.0019921)1:0.012072,(BRDT_Notechis:0.00537679,BRDT_Pseudonaja:0.0191896)1:0.0164567)1:0.0470645,BRDT_Anolis:0.0159873)1:0.0972132,(((((((BRDT_Passer:0.0122782,((BRDT_Catharus:0.0127055,BRDT_Taeniopygia:0.0128737)1:0.00049514,BRDT_Zonotrichia:1e-08)1:0.00068275)1:0.00403944,BRDT_Hirundo:0.0214047)1:0.00276369,BRDT_Ficedula:0.00754522)1:0.00831206,BRDT_Molothrus:0.00461242)1:0.00769393,BRDT_Geospiza:0.00323768)1:0.0229039,((BRDT_Parus:0.00745207,BRDT_Pseudopodoces:0.00536542)1:0.0279992,BRDT_Sturnus:0.0228812)1:0.00589457)1:0.0415982,(((((((((((((BRDT_Oxyura:1e-08,BRDT_Anser:0.0127506)1:0.00426853,(BRDT_Aythya:0.0534312,BRDT_Anas:1e-08)1:0.00875153)1:0.0153311,BRDT_Egretta:0.00851811)1:0.00648606,((((BRDT_Numida:0.00233744,BRDT_Coturnix:0.0229482)1:0.0107927,BRDT_Haliaeetus:1e-08)1:0.00092511,((BRDT_Apteryx:0.00316266,BRDT_Struthio:0.00942031)1:0.00123603,BRDT_Tinamus:0.0100059)1:0.0105428)1:0.00180978,(((BRDT_Charadrius:0.00822389,(BRDT_Falco:0.00380299,BRDT_Falco:0.00900122)1:0.00404607)1:0.00194143,BRDT_Aptenodytes:0.00389487)1:0.0101976,BRDT_Columba:0.00725388)1:0.00142083)1:0.00759827)1:0.00465402,BRDT_Calidris:0.00753896)1:0.00397191,((BRDT_Nipponia:0.0022291,(BRDT_Cuculus:0.0133937,BRDT_Tyto:0.0122041)1:0.00352704)1:0.00836185,BRDT_Pygoscelis:0.00175045)1:0.0174243)1:0.00288167,(BRDT_Chiroxiphia:0.00942242,BRDT_Manacus:0.0035068)1:0.0417883)1:0.00731944,BRDT_Eurypyga:0.0397215)1:0.00125324,BRDT_Opisthocomus:0.023329)1:0.00736022,BRDT_Athene:0.0378793)1:0.0112206,(BRDT_Chaetura:0.0333999,BRDT_Colius:0.0333253)1:0.0122655)1:0.00577113,BRDT_Dryobates:0.0479917)1:0.016611,((BRDT_Gavialis:0.0122877,BRDT_Crocodylus:0.0130301)1:0.00133265,((BRDT_Alligator:0.00551964,BRDT_Alligator:0.00694305)1:0.0236327,(BRDT_Chelonia:0.0120801,BRDT_Pelodiscus:0.0130262)1:0.0216461)1:0.0114427)1:0.0358734)1:0.0128491)1:0.0156714)1:0.0635494)1:0.00616159,(((BRDT_Rana:0.0379372,BRDT_Nanorana:0.0543679)1:0.0562044,(BRDT_Bufo:0.0789033,BRDT_Xenopus:0.0607401)1:0.0247159)1:0.0425568,(BRD4_Rana:0.0547529,(((((((BRD4_Bufo:0.0328547,(BRD4_Nipponia:0.199948,BRD4_Dasypus:1e-08)1:0.0626994)1:5.21e-05,BRD4_Nanorana:0.0199964)1:0.0203641,BRD4_Xenopus:0.0457176)1:0.00345362,((BRD4_Talpa:0.00158578,BRD4_Erinaceus:1e-08)1:0.00495731,BRD4_Sorex:0.00827223)1:0.00752424)1:0.00050645,(((((BRD4_Chaetura:1e-08,BRD4_Bos:0.00011857)1:0.0010941,BRD4_Homo:1e-08)1:0.00099677,BRD4_Pteropus:1e-08)1:0.00447449,BRD4_Chelonia:0.0349785)1:0.00193199,BRD4_Monodelphis:0.00800983)1:0.00374906)1:0.00458279,BRD4_Tupaia:0.00378434)1:0.0127862,((BRD3_Amblyraja:0.0416654,(((BRD3_Apteryx:1e-08,BRD3_Chrysemys:0.00214206)1:0.00695577,(BRD3_Pteropus:0.0107836,BRD3_Myotis:0.00183893)1:0.00450419)1:0.00753748,BRD3_Xenopus:0.0311163)1:0.0266613)1:0.0189684,(BRD2_Passer:1e-08,BRD2_Dromaius:0.00279441)1:0.0647642)1:0.0461361)1:0.00379821)1:0.0705557)1:0.0291291)1:0.0185666,(((BRDT_Chanos:0.0326536,(BRDT_Carassius:0.0629895,BRDT_Electrophorus:0.0794646)1:0.0199817)1:0.00691631,BRDT_Pangasianodon:0.0423998)1:0.00150251,BRDT_Ictalurus:0.083006)1:0.047163)1:0.0324262,((BRDT_Anarrhichthys:0.0852551,((BRDT_Mastacembelus:0.0130222,BRDT_Anabas:0.0423013)1:0.0274805,BRDT_Amphiprion:0.103994)1:0.0148112)1:0.0209881,BRDT_Boleophthalmus:0.0899485)1:0.0371156)1:0.010232,(BRDT_Nothobranchius:0.146172,((BRDT_Poecilia:0.00810452,BRDT_Xiphophorus:0.00531195)1:0.0104393,BRDT_Poecilia:1e-08)1:0.0962027)1:0.0379704)1:0.261493,BRD4_Loxodonta:1e-08)1:0.187279,BRDT_Clupea:0.1832)1:0.049578,((((((BRDT_Nematolebias:0.0275197,BRDT_Kryptolebias:0.0624839)1:0.0300811,(((((((((((((BRDT_Etheostoma:0.0439503,BRDT_Sander:1e-08)1:0.018661,BRDT_Lates:0.027743)1:0.0108473,BRDT_Seriola:1e-08)1:0.00627229,BRDT_Seriola:1e-08)1:0.012536,(BRDT_Cottoperca:0.0963829,BRDT_Larimichthys:1e-08)1:0.0163007)1:0.00783299,(BRDT_Sparus:0.0119559,BRDT_Betta:0.0648987)1:0.00267932)1:0.0131332,BRDT_Echeneis:0.0523842)1:0.00103703,BRDT_Paralichthys:0.0790715)1:0.00062421,BRDT_Perca:0.0349261)1:0.0017679,BRDT_Monopterus:0.024031)1:0.0132579,((BRDT_Parambassis:0.0852434,BRDT_Stegastes:0.0717254)1:0.0159563,BRDT_Acanthochromis:0.0436462)1:0.00610128)1:0.00879359,((BRDT_Archocentrus:0.0360138,((BRDT_Neolamprologus:1e-08,BRDT_Oreochromis:0.0182694)1:0.00378226,((BRDT_Haplochromis:7.06e-06,BRDT_Pundamilia:0.0124195)1:0.00092548,BRDT_Maylandia:0.0116502)1:0.0209575)1:0.0137489)1:0.0501738,BRDT_Labrus:0.0818663)1:0.00169537)1:0.010503,BRDT_Fundulus:0.0559455)1:0.00203605)1:0.0215787,(BRDT_Gadus:0.230947,BRDT_Sphaeramia:0.0222155)1:0.00825108)1:0.0266024,BRDT_Oryzias:0.0932499)1:0.0172307,BRDT_Gouania:0.155623)1:0.00979084,((BRDT_Myripristis:0.0992465,(BRDT_Salmo:0.0341025,BRDT_Esox:0.0409943)1:0.0859359)1:0.0215269,BRDT_Cynoglossus:0.164429)1:0.0221782)1:0.0217027)1:0.0517307,((((((BRDT_Tachyglossus:0.0137915,BRDT_Ornithorhynchus:0.0114358)1:0.0387543,(BRDT_Trichosurus:0.0204601,(BRDT_Vombatus:0.0167394,(BRDT_Phascolarctos:0.040349,BRDT_Sarcophilus:1e-08)1:0.00904748)1:0.0157891)1:0.0202943)1:0.016022,((((((((BRDT_Sturnira:0.00293542,BRDT_Phyllostomus:0.0223389)1:0.0290865,BRDT_Miniopterus:0.0173542)1:0.00887436,((((BRDT_Halichoerus:1e-08,BRDT_Phoca:0.0086797)1:0.0104933,BRDT_Colobus:0.0154923)1:0.00604988,(BRDT_Microtus:0.0445206,BRDT_Mesocricetus:1e-08)1:0.0196035)1:0.00688638,BRDT_Carlito:0.0525914)1:0.00611385)1:0.0110393,(BRDT_Balaenoptera:0.00016027,BRDT_Physeter:0.0247933)1:0.0215946)1:0.00384192,BRDT_Dasypus:0.0333582)1:0.0133889,BRDT_Nannospalax:0.0904832)1:0.013041,BRDT_Jaculus:0.140008)1:0.00832194,(BRDT_Fukomys:0.0314758,BRDT_Chinchilla:0.0335399)1:0.0257333)1:0.0323989)1:0.0397268,((BRDT_Geotrypetes:0.0368973,BRDT_Microcaecilia:0.00259336)1:0.00781638,BRDT_Rhinatrema:0.0146972)1:0.167202)1:0.0111414,(((BRDT_Lacerta:0.00814119,BRDT_Podarcis:0.00398405)1:0.0235389,BRDT_Zootoca:1e-08)1:0.0423554,(((BRDT_Trachemys:0.0035049,BRDT_Gopherus:0.00917544)1:0.0116863,BRDT_Aquila:0.457443)1:0.123476,(BRDT_Pogona:0.0765725,BRDT_Gekko:0.11005)1:0.0131477)1:0.010564)1:0.0861643)1:0.0488025,BRDT_Erpetoichthys:0.134841)1:0.0208097)1:0.0188866,(((BRD4_Crotalus:1e-08,BRD4_Protobothrops:0.0194954)1:0.00664728,(BRD4_Notechis:0.00871313,BRD4_Thamnophis:0.00605185)1:0.00708791)1:0.0265903,((BRD4_Geotrypetes:0.0151587,BRD4_Microcaecilia:0.00966888)1:0.0520377,(((((((((((BRD4_Rhinolophus:0.00119447,BRD4_Chrysochloris:1e-08)1:0.00285233,(BRD4_Peromyscus:0.0429927,BRD4_Mus:1e-08)1:0.00998791)1:0.00863828,BRD4_Condylura:1e-08)1:0.00276822,BRD4_Meriones:0.00974361)1:0.0115024,BRD4_Cricetulus:0.0145388)1:0.0375395,BRD4_Catharus:1e-08)1:0.00519311,(((BRD4_Pogona:0.00532986,BRD4_Anolis:0.00702496)1:0.00553835,BRD4_Gekko:0.00785214)1:0.00061836,((BRD4_Coturnix:0.0099814,BRD4_Gallus:0.0145463)1:0.0105796,BRD4_Ornithorhynchus:0.00459137)1:0.00212722)1:0.0181429)1:0.00704045,BRD4_Serinus:0.00160335)1:0.00931448,BRD4_Sturnus:0.00205213)1:0.0130884,BRD4_Columba:1e-08)1:0.00400402,BRD4_Neopelma:1e-08)1:0.00773697)1:0.030225)1:0.0206437)1:0.00966947,((BRDT_Pygocentrus:0.0425888,BRDT_Astyanax:0.00776157)1:0.0758978,((((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