table1 script updated

scripts/annexes/CB_proteins.txt

+FBA
+GAPDH
+PGK
+PRK
+RPE
+RPI
+RubiscoLS
+RubiscoSS
+TPI
+TRK
+FBPase
+SBPase

scripts/annexes/CB_proteins_an.txt

+FBA
+GAPDH
+PGK
+PRK
+RPE
+RPI
+TPI
+TRK
+FBPase
+SBPase

scripts/annexes/FBA_domains.txt

+FBA_PF00274

scripts/annexes/FBPase_domains.txt

+FBPase_PF00316
+FBPase_PF18913

scripts/annexes/GAPDH_domains.txt

+GAPDH_PF00044
+GAPDH_PF02800

scripts/annexes/PGK_domains.txt

+PGK_PF00162

scripts/annexes/PRK_domains.txt

+PRK_PF00485

scripts/annexes/RPE_domains.txt

+RPE_PF00834

scripts/annexes/RPI_domains.txt

+RPI_PF06026

scripts/annexes/RubiscoLS_domains.txt

+RubiscoLS_PF00016
+RubiscoLS_PF02788

scripts/annexes/RubiscoSS_domains.txt

+RubiscoSS_PF00101

scripts/annexes/SBPase_domains.txt

+SBPase_PF00316
+SBPase_PF18913

scripts/annexes/TPI_domains.txt

+TPI_PF00121

scripts/annexes/TRK_domains.txt

+TRK_PF00456
+TRK_PF02779
+TRK_PF02780

scripts/annexes/x.tmp.txt

+SBPase_PF00316
+SBPase_PF18913

scripts/get_all_up_subtree.py

+import sys
+import ete3
+
+tree_fn = sys.argv[1]
+node_name = sys.argv[2]
+
+t = ete3.Tree(tree_fn)
+if node_name == "root":
+    subtree_root = t
+else:
+    subtree_root = t.search_nodes(name=node_name)[0]
+
+for l in [x for x in subtree_root]:
+    n = l.name.split()[0]
+    up = l.name.split("|")[1]
+    print(n)
+