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Konstantin Volzhenin
SENSE-PPI
Commits
d51c12e8
Commit
d51c12e8
authored
Sep 01, 2023
by
Konstantin Volzhenin
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0.3.2 default params for create_dataset changed
parent
fbfc4fc1
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__init__.py
senseppi/__init__.py
+1
-1
create_dataset.py
senseppi/commands/create_dataset.py
+1
-1
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senseppi/__init__.py
View file @
d51c12e8
__version__
=
"0.3.
1
"
__version__
=
"0.3.
2
"
__author__
=
"Konstantin Volzhenin"
__author__
=
"Konstantin Volzhenin"
from
.
import
model
,
commands
,
esm2_model
,
dataset
,
utils
,
network_utils
from
.
import
model
,
commands
,
esm2_model
,
dataset
,
utils
,
network_utils
...
...
senseppi/commands/create_dataset.py
View file @
d51c12e8
...
@@ -266,7 +266,7 @@ def add_args(parser):
...
@@ -266,7 +266,7 @@ def add_args(parser):
help
=
"The minimum length of a protein to be included in the dataset."
)
help
=
"The minimum length of a protein to be included in the dataset."
)
parser
.
add_argument
(
"--max_length"
,
type
=
int
,
default
=
800
,
parser
.
add_argument
(
"--max_length"
,
type
=
int
,
default
=
800
,
help
=
"The maximum length of a protein to be included in the dataset."
)
help
=
"The maximum length of a protein to be included in the dataset."
)
parser
.
add_argument
(
"--max_positive_pairs"
,
type
=
int
,
default
=
5000
,
parser
.
add_argument
(
"--max_positive_pairs"
,
type
=
int
,
default
=
None
,
help
=
"The maximum number of positive pairs to be included in the dataset. "
help
=
"The maximum number of positive pairs to be included in the dataset. "
"If None, all pairs are included. If specified, the pairs are selected "
"If None, all pairs are included. If specified, the pairs are selected "
"based on the combined score in STRING."
)
"based on the combined score in STRING."
)
...
...
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