fixed a bug in parsing hmmsearch output when a '== domain' block does not contain a hit/alignment

scripts/parseHMMER.py

@@ -41,7 +41,7 @@ def parseHMMER(fh,hmmDict):
             # process domain table
             line = fh.readline()
             hitTable = []
-            while line and not line.lstrip().startswith("== domain "):
+            while line and not line.lstrip().startswith("== domain ") and not line.startswith(">> ") and not line.startswith("Query: "):
                 tokens = line.split()
                 ## domain table row:
                 ## domNum  [!?]  score  bias  c-Evalue  i-Evalue  hmmfrom  hmm-to  .. alifrom  ali-to  ..  envfrom  env-to  ..  acc