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metaclade2
Commit a20fccc4 by Riccardo Vicedomini
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print of CMMs/HMMs path

parent 7a7a63f8
Showing with 2 additions and 0 deletions
scripts/mclade_create_jobs.py
...@@ -68,8 +68,10 @@ class CladeController: ...@@ -68,8 +68,10 @@ class CladeController:
print(f'[{script_name}] MetaCLADE root path: {self.clade_root}') print(f'[{script_name}] MetaCLADE root path: {self.clade_root}')
# Get remaining options which might depend on CLADE's base path # Get remaining options which might depend on CLADE's base path
self.CCMs_path = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_CCMS_PATH) self.CCMs_path = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_CCMS_PATH)
print(f'[{script_name}] CCMs path: {self.CCMs_path}')
self.CCMs_ext = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_CCMS_EXT) self.CCMs_ext = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_CCMS_EXT)
self.HMMs_path = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_HMMS_PATH) self.HMMs_path = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_HMMS_PATH)
print(f'[{script_name}] HMMs path: {self.HMMs_path}')
self.HMMs_ext = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_HMMS_EXT) self.HMMs_ext = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_HMMS_EXT)
self.domain_list = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_DOM_LIST_PATH) self.domain_list = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_DOM_LIST_PATH)
self.knownarchs = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_KNOWNARCHS) self.knownarchs = self.cladeCfgParser.get(C.CLADE_SECTION,C.CLADE_OPT_KNOWNARCHS)
......
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