Merge branch 'master' of http://gitlab.lcqb.upmc.fr/vicedomini/metaclade2

metaclade2-common

@@ -17,7 +17,7 @@
 # Common functions and definitions
 PV_NAME="MetaCLADE"
 PV_VERSION='2.0'
-PV_DATE='20200220'
+PV_DATE='20200318'
 
 function abspath() { echo "$(cd "$(dirname "$1")"; pwd -P)/$(basename "$1")"; }
 

scripts/filter_hits.py

@@ -8,6 +8,8 @@ from collections import defaultdict
 
 from mclade_utils import *
 
+script_name = os.path.splitext( os.path.basename(__file__) )[0]
+
 # ARGUMENTS
 RESULT_FILE = "result_file"
 OUT_RESULT_FILE = "out_result_files"
@@ -30,6 +32,8 @@ def main():
     # load results file and sort the hits by decreasing score
     results = []
     for result_filename in args[RESULT_FILE]:
+        if not os.path.isfile(result_filename):
+            continue
         with open(result_filename,'r') as result_file:
             for line in result_file:
                 results.append( line.rstrip(' \n\r').split('\t') )