Analyzing the ESGEMME output
----------------------------

By default, ESGEMME will output the following files: \*
myProt_normPred_evolEpi.txt \* myProt_normPred_evolInd.txt \*
myProt_normPred_evolCombi.txt

The most important output file is **myProt_normPred_evolCombi.txt**. The
values of interest are the normalized predictions (normPred). Each file
contains a 20 x n matrix, where n is the number of positions (columns) in the
query sequence. If the user provides her/his own list of mutations, then
only the global epistatic model will be run and the output file will
contain 2 columns, the first one with the mutations, the second one with
the normalized predicted effects.
