# Analyzing the ESGEMME output

By default, ESGEMME will output the following files: * myProt_normPred_evolEpi.txt * myProt_normPred_evolInd.txt * myProt_normPred_evolCombi.txt

The most important output file is myProt_normPred_evolCombi.txt. The values of interest are the normalized predictions (normPred). Each file contains a 20 x n matrix, where n is the number of positions (columns) in the query sequence. If the user provides her/his own list of mutations, then only the global epistatic model will be run and the output file will contain 2 columns, the first one with the mutations, the second one with the normalized predicted effects.