\relax 
\providecommand\hyper@newdestlabel[2]{}
\providecommand\babel@aux[2]{}
\@nameuse{bbl@beforestart}
\providecommand\HyperFirstAtBeginDocument{\AtBeginDocument}
\HyperFirstAtBeginDocument{\ifx\hyper@anchor\@undefined
\global\let\oldcontentsline\contentsline
\gdef\contentsline#1#2#3#4{\oldcontentsline{#1}{#2}{#3}}
\global\let\oldnewlabel\newlabel
\gdef\newlabel#1#2{\newlabelxx{#1}#2}
\gdef\newlabelxx#1#2#3#4#5#6{\oldnewlabel{#1}{{#2}{#3}}}
\AtEndDocument{\ifx\hyper@anchor\@undefined
\let\contentsline\oldcontentsline
\let\newlabel\oldnewlabel
\fi}
\fi}
\global\let\hyper@last\relax 
\gdef\HyperFirstAtBeginDocument#1{#1}
\providecommand\HyField@AuxAddToFields[1]{}
\providecommand\HyField@AuxAddToCoFields[2]{}
\babel@aux{english}{}
\newlabel{index::doc}{{}{1}{}{section*.2}{}}
\@writefile{toc}{\contentsline {chapter}{\numberline {1}Using ESCOTT via Docker}{1}{chapter.1}\protected@file@percent }
\@writefile{lof}{\addvspace {10\p@ }}
\@writefile{lot}{\addvspace {10\p@ }}
\newlabel{docker:using-escott-via-docker}{{1}{1}{Using ESCOTT via Docker}{chapter.1}{}}
\newlabel{docker::doc}{{1}{1}{Using ESCOTT via Docker}{chapter.1}{}}
\@writefile{toc}{\contentsline {section}{\numberline {1.1}Requirements}{1}{section.1.1}\protected@file@percent }
\newlabel{docker:requirements}{{1.1}{1}{Requirements}{section.1.1}{}}
\@writefile{toc}{\contentsline {section}{\numberline {1.2}Getting the example input data}{1}{section.1.2}\protected@file@percent }
\newlabel{docker:getting-the-example-input-data}{{1.2}{1}{Getting the example input data}{section.1.2}{}}
\@writefile{toc}{\contentsline {section}{\numberline {1.3}Single point mutation calculations}{2}{section.1.3}\protected@file@percent }
\newlabel{docker:single-point-mutation-calculations}{{1.3}{2}{Single point mutation calculations}{section.1.3}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.3.1}Obtaining the entire single point mutation landscape}{2}{subsection.1.3.1}\protected@file@percent }
\newlabel{docker:obtaining-the-entire-single-point-mutation-landscape}{{1.3.1}{2}{Obtaining the entire single point mutation landscape}{subsection.1.3.1}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {1.3.2}Predicting the effect of a subset of single point mutations}{2}{subsection.1.3.2}\protected@file@percent }
\newlabel{docker:predicting-the-effect-of-a-subset-of-single-point-mutations}{{1.3.2}{2}{Predicting the effect of a subset of single point mutations}{subsection.1.3.2}{}}
\@writefile{toc}{\contentsline {section}{\numberline {1.4}Multiple point mutation calculations}{3}{section.1.4}\protected@file@percent }
\newlabel{docker:multiple-point-mutation-calculations}{{1.4}{3}{Multiple point mutation calculations}{section.1.4}{}}
\@writefile{toc}{\contentsline {section}{\numberline {1.5}Running several jobs using docker}{3}{section.1.5}\protected@file@percent }
\newlabel{docker:running-several-jobs-using-docker}{{1.5}{3}{Running several jobs using docker}{section.1.5}{}}
\@writefile{toc}{\contentsline {chapter}{\numberline {2}Analyzing and Modifying the PRESCOTT Output}{5}{chapter.2}\protected@file@percent }
\@writefile{lof}{\addvspace {10\p@ }}
\@writefile{lot}{\addvspace {10\p@ }}
\newlabel{analysis:analyzing-and-modifying-the-prescott-output}{{2}{5}{Analyzing and Modifying the PRESCOTT Output}{chapter.2}{}}
\newlabel{analysis::doc}{{2}{5}{Analyzing and Modifying the PRESCOTT Output}{chapter.2}{}}
\@writefile{toc}{\contentsline {section}{\numberline {2.1}Raw PRESCOTT Scores and Their Interpretation}{5}{section.2.1}\protected@file@percent }
\newlabel{analysis:raw-prescott-scores-and-their-interpretation}{{2.1}{5}{Raw PRESCOTT Scores and Their Interpretation}{section.2.1}{}}
\@writefile{toc}{\contentsline {section}{\numberline {2.2}Entire Single Point Mutation Landscape Calculations}{5}{section.2.2}\protected@file@percent }
\newlabel{analysis:entire-single-point-mutation-landscape-calculations}{{2.2}{5}{Entire Single Point Mutation Landscape Calculations}{section.2.2}{}}
\@writefile{toc}{\contentsline {section}{\numberline {2.3}Selected Single Point or Multiple Point Mutation Calculations}{6}{section.2.3}\protected@file@percent }
\newlabel{analysis:selected-single-point-or-multiple-point-mutation-calculations}{{2.3}{6}{Selected Single Point or Multiple Point Mutation Calculations}{section.2.3}{}}
\@writefile{toc}{\contentsline {chapter}{\numberline {3}Preparing Your Own Input}{7}{chapter.3}\protected@file@percent }
\@writefile{lof}{\addvspace {10\p@ }}
\@writefile{lot}{\addvspace {10\p@ }}
\newlabel{input-preparation:preparing-your-own-input}{{3}{7}{Preparing Your Own Input}{chapter.3}{}}
\newlabel{input-preparation::doc}{{3}{7}{Preparing Your Own Input}{chapter.3}{}}
\@writefile{toc}{\contentsline {section}{\numberline {3.1}Preparing Your Input MSA and PDB with Colabfold}{7}{section.3.1}\protected@file@percent }
\newlabel{input-preparation:preparing-your-input-msa-and-pdb-with-colabfold}{{3.1}{7}{Preparing Your Input MSA and PDB with Colabfold}{section.3.1}{}}
\@writefile{toc}{\contentsline {chapter}{\numberline {4}Installation}{9}{chapter.4}\protected@file@percent }
\@writefile{lof}{\addvspace {10\p@ }}
\@writefile{lot}{\addvspace {10\p@ }}
\newlabel{installation:installation}{{4}{9}{Installation}{chapter.4}{}}
\newlabel{installation::doc}{{4}{9}{Installation}{chapter.4}{}}
\@writefile{toc}{\contentsline {section}{\numberline {4.1}Installing the dependencies:}{9}{section.4.1}\protected@file@percent }
\newlabel{installation:installing-the-dependencies}{{4.1}{9}{Installing the dependencies:}{section.4.1}{}}
\@writefile{toc}{\contentsline {section}{\numberline {4.2}Preparation of the environment and installation of PRESCOTT}{9}{section.4.2}\protected@file@percent }
\newlabel{installation:preparation-of-the-environment-and-installation-of-prescott}{{4.2}{9}{Preparation of the environment and installation of PRESCOTT}{section.4.2}{}}
\@writefile{toc}{\contentsline {section}{\numberline {4.3}Configuring default.conf file}{11}{section.4.3}\protected@file@percent }
\newlabel{installation:configuring-default-conf-file}{{4.3}{11}{Configuring default.conf file}{section.4.3}{}}
\@writefile{toc}{\contentsline {chapter}{\numberline {5}Indices and tables}{13}{chapter.5}\protected@file@percent }
\@writefile{lof}{\addvspace {10\p@ }}
\@writefile{lot}{\addvspace {10\p@ }}
\newlabel{index:indices-and-tables}{{5}{13}{Indices and tables}{chapter.5}{}}
\gdef \@abspage@last{17}
