Updated the Dockerfile for scikit-learn in prescott.py.

Dockerfile

@@ -78,6 +78,7 @@ RUN rm -f hhsuite-3.3.0-AVX2-Linux.tar.gz
 WORKDIR /home/tekpinar/research/lcqb
 RUN sed -i s#/home/tekpinar/research/lcqb/JET2/matrix#/usr/local/JET2/matrix#g ./PRESCOTT/prescott/default.conf
 RUN sed -i s#/home/tekpinar/research/lcqb/naccess2.1.1/naccess#/usr/local/naccess2.1.1/naccess#g ./PRESCOTT/prescott/default.conf
+RUN pip3 install scikit-learn
 RUN pip3 install ./PRESCOTT/
 RUN pip3 install -e ./demust/
 

README.md

@@ -54,17 +54,7 @@ escott --help
 By default, ESCOTT will predict the effect of all possible single mutations at all positions in the 
 query sequence. Alternatively, a set of single or multiple mutations can be given with the option -m.
 Each line of the file should contain a mutation (e.g. D136R) or combination of mutations separated 
-by commas (or colons) and ordered according to their positions in the sequence (e.g. D136R,V271A).
-
-GEMME calls JET2 to compute evolutionary conservation levels. By default, JET2 will retrieve a set
-of sequences related to the query, independent from the input set, according to specific criteria.
-The retrieval method used in JET2 is PSI-BLAST, which can perform the search either locally (by 
-default) or remotely (-r server). Alternatively, the user can provide her/his own psiblast file  
-(-r input-b pFile) or her/his own multiple sequence alignment in FASTA format (-r input -f fFile).
-JET is run in its iterative mode, iJET, 10 times and the final conservation levels are the maxium 
-values obtained over the 10 iterations. 
-JET2 configuration file is: default.conf.
-JET2 output file is: myProt_jet.res.
+by colons and ordered according to their positions in the sequence (e.g. D136R,V271A).
 
 ### Running the prescott program
 A quick help can be accessed by typing 
@@ -77,7 +67,7 @@ prescott -e ../data/MLH1_normPred_evolCombi.txt -g ../data/gnomAD_v2.1.1_MLH1_HU
 ```
 The most important output is prescott-scores.txt file, which produces frequecy modified scores for the mutations. 
 
-Please note that the example input files are in the data directory of this repository. 
+Please note that the example input files for prescott are in the data directory of this repository.