Clean tree files in Newick format produced by JET

gemmeAnal.py

@@ -11,6 +11,7 @@ import re
 import math
 import subprocess
 import shutil
+import glob
 
 
 
@@ -201,6 +202,14 @@ def cleanTheMess(prot,bFile,fFile, chainID):
 #	if os.path.isfile(prot+"/"+prot+"_jet.res"):
 #		os.rename(prot+"/"+prot+"_jet.res",prot+"_jet.res")
 #	os.remove(prot+".pdb")
+	
+	# Get all files with suffix nwk
+	treefiles = glob.glob('*.nwk')
+
+	# Iterate over the list of files and remove individually
+	for file in treefiles:
+		os.remove(file)
+
 	dir_name = prot+"/"
 	if os.path.isdir(dir_name):
 		for f in os.listdir(dir_name):